CFG201
Library CF
(Link to library)
Clone ID CFG201
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11253-1|Contig-U12872-1
Original site URL
Representative seq. ID CFG201P
(Link to Original site)
Representative DNA sequence
>CFG201 (CFG201Q) /CSM/CF/CFG2-A/CFG201Q.Seq.d/
TGTATGTCAGTTAGAACCATTGAACATGAGGAATATATAGCATGGAATAAAATTCATCAA
GAGGCTTCAATCTCTTTGGTGAAGAAAGCAGAGAAAGTAGATGCAGCTTGTGAACTTATA
GAAAAGGATCTATTATTAATTGGTTCAACAGGTATTGAAGATAGATTACAAGATCATGTA
CCAGAGACAATATCGGCTCTAAGAGAGGCTGGTATTAAAGTTTGGGTGTTAACAGGTGAT
AAACAAGAGACGGCAATTAGTATTTCAACTTCATCCGCTGTAATCAATGAAGAAATGGAG
TTGATTATATTGAATGAATCTAATAAACAAGCATTGATGAAAAGATTGTTAACAATATCC
AACGAGAAGAGATTACATCATTTCAATGATATGTCTGGTAGATGGGGTTCTGTAAAGTAT
CTTTCAAAACTTTTGGAAAAAGTTGCAAGTAAATTAAGATTAGAGCCCTCAGATGCACCA
AATCTATTAAATAAATCCAATGGAATGTCAGCACCAGCAGTTAATGCAAGTCAAAAACAT
ATCGCCATCATTATCGATGGTAGTACATTGGCTTTGGCATTGGAGCCTGATTTACGTTAT
TTCTTTTTACAXXXXXXXXXXTTGCACTCTCAATTAGTCAATTTTGGTTTGGTTTCTTTC
AGGCTTTAGTGGTCAAATGATTTATTTCGATTTCCTTTTCACTCTTTACAATGCATTGTT
CACATCATTACCTGTCATATTTTTAGGTACATTCGATCAAGACACCAAAGAGGATGACCT
ATTGAACAAACCATATCTCTATAGGGTTTGTCAATCAAATTCACCATTTTCAACTTGGAA
ATTTATTTGGTGGGTTTTCATTGGTATGTGGCAATCAGCAACTATTTTCTTTGTAACCTT
TTTCGTAATGAATACTTCAACCATTGAAGGTGGTAAAACTCTTGGTCTTTGGTCCATTGG
TACTGCTGCCTACATTTATTTGGTAGTCACTGTCAATTTACAAATTAGTTTCATCACTCG
TTATTGGACTCGTCAAACCATTTTAGCCGTATCCATTAGTGTTGTCTCCACTTTCCTATT
TGTAATGTTGTATAGTGTACTCGGTAGATACGTAGAAGCTGATGCAACCCATATCATCTT
TGAACTCTATGCTTTACCAACCTTTTGGCTACTTTTAATTATTGCTCCATCAATTGCTTT
ATTACCTTATATAATTGTATCTTTAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
CMSVRTIEHEEYIAWNKIHQEASISLVKKAEKVDAACELIEKDLLLIGSTGIEDRLQDHV
PETISALREAGIKVWVLTGDKQETAISISTSSAVINEEMELIILNESNKQALMKRLLTIS
NEKRLHHFNDMSGRWGSVKYLSKLLEKVASKLRLEPSDAPNLLNKSNGMSAPAVNASQKH
IAIIIDGSTLALALEPDLRYFFL---

---ALSISQFWFGFFQALVVK*fisisfslftmhcshhylsyf*vhsiktpkrmty*tnh
isigfvnqihhfqlgnlfggfslvcgnqqlfsl*pfs**ilqplkvvkllvfgplvllpt
fiw*slsiyklvsslviglvkpf*pyplvlsplsyl*ccivysvdt*klmqpisslnsml
yqpfgyf*lllhqllyyli*lyl*


Translated Amino Acid sequence (All Frames)
Frame A:
CMSVRTIEHEEYIAWNKIHQEASISLVKKAEKVDAACELIEKDLLLIGSTGIEDRLQDHV
PETISALREAGIKVWVLTGDKQETAISISTSSAVINEEMELIILNESNKQALMKRLLTIS
NEKRLHHFNDMSGRWGSVKYLSKLLEKVASKLRLEPSDAPNLLNKSNGMSAPAVNASQKH
IAIIIDGSTLALALEPDLRYFFL---

---lhsqlvnfglvsfrl*wsndlfrfpfhslqcivhiitchifryirsrhqrg*pieqt
isl*glsikftifnleiylvgfhwyvaisnyflcnlfrneyfnh*rw*nswslvhwyccl
hlfgshcqftn*fhhslldssnhfsrih*cclhfpicnvv*ctr*irrs*cnpyhl*tlc
ftnllatfnycsincfitlyncifk

Frame B:
vcqleplnmrni*hgikfikrlqslw*rkqrk*mqlvnl*kriyy*lvqqvlkidykimy
qrqyrl*erlvlkfgc*qvinkrrqlvfqlhpl*smkkws*ly*mnlinkh**kdc*qyp
trrdyiismiclvdgvl*sifqnfwkklqvn*d*spqmhqiy*inpmecqhqqlmqvkni
spslsmvvhwlwhwsliyvisfy---

---ctln*silvwflsgfsgqmiyfdflftlynalftslpviflgtfdqdtkeddllnkp
ylyrvcqsnspfstwkfiwwvfigmwqsatiffvtffvmntstieggktlglwsigtaay
iylvvtvnlqisfitrywtrqtilavsisvvstflfvmlysvlgryveadathiifelya
lptfwllliiapsiallpyiivsl

Frame C:
yvs*nh*t*giysme*nssrgfnlfgeesresrcsl*tyrkgsiinwfnry*r*itrsct
rdnigskrgwy*slgvnr**trdgn*yfnfircnq*rngvdyie*i**tsidekivnniq
reeitsfq*yvw*mgfckvsfktfgksck*ikiralrctksik*iqwnvstss*ckskty
rhhyrw*yigfgiga*ftlflft---

---ALSISQFWFGFFQALVVK*fisisfslftmhcshhylsyf*vhsiktpkrmty*tnh
isigfvnqihhfqlgnlfggfslvcgnqqlfsl*pfs**ilqplkvvkllvfgplvllpt
fiw*slsiyklvsslviglvkpf*pyplvlsplsyl*ccivysvdt*klmqpisslnsml
yqpfgyf*lllhqllyyli*lyl*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG201 (CFG201Q) /CSM/CF/CFG2-A/CFG201Q.Seq.d/ 2373 0.0
AHD108 (AHD108Q) /CSM/AH/AHD1-A/AHD108Q.Seq.d/ 1126 0.0
CHA861 (CHA861Q) /CSM/CH/CHA8-C/CHA861Q.Seq.d/ 880 0.0
CHA461 (CHA461Q) /CSM/CH/CHA4-C/CHA461Q.Seq.d/ 835 0.0
SLC623 (SLC623Q) /CSM/SL/SLC6-A/SLC623Q.Seq.d/ 40 0.078
SFE750 (SFE750Q) /CSM/SF/SFE7-C/SFE750Q.Seq.d/ 40 0.078
VHI446 (VHI446Q) /CSM/VH/VHI4-B/VHI446Q.Seq.d/ 36 1.2
VHE539 (VHE539Q) /CSM/VH/VHE5-B/VHE539Q.Seq.d/ 36 1.2
VHC775 (VHC775Q) /CSM/VH/VHC7-D/VHC775Q.Seq.d/ 36 1.2
SLF690 (SLF690Q) /CSM/SL/SLF6-D/SLF690Q.Seq.d/ 36 1.2

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence. 1211 0.0 2
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 48 8e-08 2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 54 0.005 1
AC110354|AC110354.5 Rattus norvegicus clone CH230-192O6, WORKING DRAFT SEQUENCE, 5 unordered pieces. 52 0.019 1
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 32 0.029 15
BZ304112|BZ304112.1 KD2767.p1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD2767, DNA sequence. 50 0.077 1
AL615626|AL615626.1 T7 end of clone 012CB12 of library SmBAC1 from strain Puerto-Rican of Schistosoma mansoni. 50 0.077 1
BH178669|BH178669.1 012_D_23-21 SmBAC1 Schistosoma mansoni genomic clone 012D23 5', DNA sequence. 50 0.077 1
CD117844|CD117844.1 ME1-0044T-R126-F10-U.G ME1-0044 Schistosoma mansoni cDNA clone ME1-0044T-R126-F10.G, mRNA sequence. 50 0.077 1
AL590103|AL590103.12 Human DNA sequence from clone RP11-132G19 on chromosome 1. 42 0.11 5
dna update 2004. 3. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115606_9(AC115606|pid:none) Dictyostelium discoideum chromosom... 352 6e-98
(P39524) RecName: Full=Probable phospholipid-transporting ATPase... 111 6e-23
FM992690_676(FM992690|pid:none) Candida dubliniensis CD36 chromo... 107 8e-22
CR382131_1440(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 104 7e-21
AE016817_749(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 103 9e-21
AP008216_580(AP008216|pid:none) Oryza sativa (japonica cultivar-... 103 1e-20
AC136955_10(AC136955|pid:none) Medicago truncatula clone mth2-10... 102 3e-20
AC137554_1(AC137554|pid:none) Medicago truncatula clone mth2-17j... 102 3e-20
(Q9LVK9) RecName: Full=Putative phospholipid-transporting ATPase... 101 6e-20
CP001575_194(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 101 6e-20
protein update 2009. 5.14
PSORT

psg: 0.75 gvh: 0.54 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CFG201 is cyt

5' end seq. ID CFG201F
5' end seq.
>CFG201F.Seq
TGTATGTCAGTTAGAACCATTGAACATGAGGAATATATAGCATGGAATAAAATTCATCAA
GAGGCTTCAATCTCTTTGGTGAAGAAAGCAGAGAAAGTAGATGCAGCTTGTGAACTTATA
GAAAAGGATCTATTATTAATTGGTTCAACAGGTATTGAAGATAGATTACAAGATCATGTA
CCAGAGACAATATCGGCTCTAAGAGAGGCTGGTATTAAAGTTTGGGTGTTAACAGGTGAT
AAACAAGAGACGGCAATTAGTATTTCAACTTCATCCGCTGTAATCAATGAAGAAATGGAG
TTGATTATATTGAATGAATCTAATAAACAAGCATTGATGAAAAGATTGTTAACAATATCC
AACGAGAAGAGATTACATCATTTCAATGATATGTCTGGTAGATGGGGTTCTGTAAAGTAT
CTTTCAAAACTTTTGGAAAAAGTTGCAAGTAAATTAAGATTAGAGCCCTCAGATGCACCA
AATCTATTAAATAAATCCAATGGAATGTCAGCACCAGCAGTTAATGCAAGTCAAAAACAT
ATCGCCATCATTATCGATGGTAGTACATTGGCTTTGGCATTGGAGCCTGATTTACGTTAT
TTCTTTTTACA----------
Length of 5' end seq. 611
3' end seq. ID CFG201Z
3' end seq.
>CFG201Z.Seq
----------TTGCACTCTCAATTAGTCAATTTTGGTTTGGTTTCTTTCAGGCTTTAGTG
GTCAAATGATTTATTTCGATTTCCTTTTCACTCTTTACAATGCATTGTTCACATCATTAC
CTGTCATATTTTTAGGTACATTCGATCAAGACACCAAAGAGGATGACCTATTGAACAAAC
CATATCTCTATAGGGTTTGTCAATCAAATTCACCATTTTCAACTTGGAAATTTATTTGGT
GGGTTTTCATTGGTATGTGGCAATCAGCAACTATTTTCTTTGTAACCTTTTTCGTAATGA
ATACTTCAACCATTGAAGGTGGTAAAACTCTTGGTCTTTGGTCCATTGGTACTGCTGCCT
ACATTTATTTGGTAGTCACTGTCAATTTACAAATTAGTTTCATCACTCGTTATTGGACTC
GTCAAACCATTTTAGCCGTATCCATTAGTGTTGTCTCCACTTTCCTATTTGTAATGTTGT
ATAGTGTACTCGGTAGATACGTAGAAGCTGATGCAACCCATATCATCTTTGAACTCTATG
CTTTACCAACCTTTTGGCTACTTTTAATTATTGCTCCATCAATTGCTTTATTACCTTATA
TAATTGTATCTTTAAA
Length of 3' end seq. 606
Connected seq. ID CFG201P
Connected seq.
>CFG201P.Seq
TGTATGTCAGTTAGAACCATTGAACATGAGGAATATATAGCATGGAATAAAATTCATCAA
GAGGCTTCAATCTCTTTGGTGAAGAAAGCAGAGAAAGTAGATGCAGCTTGTGAACTTATA
GAAAAGGATCTATTATTAATTGGTTCAACAGGTATTGAAGATAGATTACAAGATCATGTA
CCAGAGACAATATCGGCTCTAAGAGAGGCTGGTATTAAAGTTTGGGTGTTAACAGGTGAT
AAACAAGAGACGGCAATTAGTATTTCAACTTCATCCGCTGTAATCAATGAAGAAATGGAG
TTGATTATATTGAATGAATCTAATAAACAAGCATTGATGAAAAGATTGTTAACAATATCC
AACGAGAAGAGATTACATCATTTCAATGATATGTCTGGTAGATGGGGTTCTGTAAAGTAT
CTTTCAAAACTTTTGGAAAAAGTTGCAAGTAAATTAAGATTAGAGCCCTCAGATGCACCA
AATCTATTAAATAAATCCAATGGAATGTCAGCACCAGCAGTTAATGCAAGTCAAAAACAT
ATCGCCATCATTATCGATGGTAGTACATTGGCTTTGGCATTGGAGCCTGATTTACGTTAT
TTCTTTTTACA----------TTGCACTCTCAATTAGTCAATTTTGGTTTGGTTTCTTTC
AGGCTTTAGTGGTCAAATGATTTATTTCGATTTCCTTTTCACTCTTTACAATGCATTGTT
CACATCATTACCTGTCATATTTTTAGGTACATTCGATCAAGACACCAAAGAGGATGACCT
ATTGAACAAACCATATCTCTATAGGGTTTGTCAATCAAATTCACCATTTTCAACTTGGAA
ATTTATTTGGTGGGTTTTCATTGGTATGTGGCAATCAGCAACTATTTTCTTTGTAACCTT
TTTCGTAATGAATACTTCAACCATTGAAGGTGGTAAAACTCTTGGTCTTTGGTCCATTGG
TACTGCTGCCTACATTTATTTGGTAGTCACTGTCAATTTACAAATTAGTTTCATCACTCG
TTATTGGACTCGTCAAACCATTTTAGCCGTATCCATTAGTGTTGTCTCCACTTTCCTATT
TGTAATGTTGTATAGTGTACTCGGTAGATACGTAGAAGCTGATGCAACCCATATCATCTT
TGAACTCTATGCTTTACCAACCTTTTGGCTACTTTTAATTATTGCTCCATCAATTGCTTT
ATTACCTTATATAATTGTATCTTTAAA
Length of connected seq. 1217
Full length Seq ID -
Full length Seq. -
Length of full length seq. -