NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG174
Library CF
(Link to library)
Clone ID CFG174
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID CFG174P
(Link to Original site)
Representative DNA sequence 
>CFG174 (CFG174Q) /CSM/CF/CFG1-D/CFG174Q.Seq.d/
AATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGAC
ACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTT
TCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGA
ATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAA
ACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGXXXXXXXXXX
TTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAG
TAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCA
AAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGA
TGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGA
TTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTG
TAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTAT
TTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAA
GGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACG
TTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAA
GTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACNAATCCAAATAAATA
TTATTGTATACCAACTTCAACAATTTTAACTGGATTAGTCAAGTTTCAAAAAAGAATTCA
ATCAANATTTCTTTTAAGAAAANAANAAAAAAAAAAGACAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQR
MSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGG---

---SIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDNEASGSSNN
NDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIGQNEGLLGK
DIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEPGYSESSLI
FSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTGLVKFQKRIQSXFLLRKXXKKKT
Translated Amino Acid sequence (All Frames) 
Frame A:
NAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQR
MSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGG---

---fnssfkf****y***w*y***rinkk*www**i**qi*kskttt**kr**skw***q
****kfk*kpyck***iyitii*lssfr*irkgkretrl*nhl*y*tn*ihwpk*riig*
ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm*lctrtrll*ilin
lfkv*ckiywfgkvtiydxsk*illytnfnnfnwisqvskknsixisfkkxxkkkd

Frame B:
mqk*iiiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifke
chlmelhyteiyihnlkyfkh*kktkvyqvvvvevv---

---SIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDNEASGSSNN
NDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIGQNEGLLGK
DIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEPGYSESSLI
FSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTGLVKFQKRIQSXFLLRKXXKKKT

Frame C:
cknel*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfskn
vtlwsctiqkfiftt*nisnikkkqkyik*wwwrw*---

---qfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnnmmkkimkqvvvvti
mmmki*iktil*ivvnlhhhhliiii*mn*krkernkimksfvilnqlnslakmkdywvk
ilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nvtlyqnqvtlnph*s
fqslmqnllvw*shni*xiqiniivyqlqqf*ld*ssfkkefnqxff*exxkkkrh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG174 (CFG174Q) /CSM/CF/CFG1-D/CFG174Q.Seq.d/                       1719   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1312   0.0
SFJ824 (SFJ824Q) /CSM/SF/SFJ8-A/SFJ824Q.Seq.d/                       1312   0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/                       1312   0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1312   0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1312   0.0
AFE485 (AFE485Q) /CSM/AF/AFE4-D/AFE485Q.Seq.d/                       1312   0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/                       1312   0.0
AFB247 (AFB247Q) /CSM/AF/AFB2-B/AFB247Q.Seq.d/                       1312   0.0
AFB734 (AFB734Q) /CSM/AF/AFB7-B/AFB734Q.Seq.d/                       1308   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   3e-22  27
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   4e-16  24
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   2e-15  22
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   2e-15  18
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           50   1e-13  21
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    58   6e-13  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50   2e-12  25
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    40   1e-11  18
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         48   1e-11  18
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    52   1e-11  18
dna update 2004. 3. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    40   0.093
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for...    36   2.3
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial...    35   3.0
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part...    35   3.0
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL...    35   3.0
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   3.9
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif...    35   3.9
(Q0VC65) RecName: Full=Transcription factor ETV6;  &BC120331_1(B...    35   3.9
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien.         35   3.9
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   5.1
protein update 2009. 5.14
PSORT 

 psg: 0.47  gvh: 0.26  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFG174 is nuc
5' end seq. ID CFG174F
5' end seq. 
>CFG174F.Seq
AATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGAC
ACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTT
TCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGA
ATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAA
ACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAG----------
Length of 5' end seq. 290
3' end seq. ID CFG174Z
3' end seq. 
>CFG174Z.Seq
----------TTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTA
GTATTAATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAAT
ATAAAAATCAAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACA
ATAATGATGATGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCAC
CATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATG
AAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTA
AAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAAT
TAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTG
ATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAA
TCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACNAATC
CAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTGGATTAGTCAAGTTTCAAA
AAAGAATTCAATCAANATTTCTTTTAAGAAAANAANAAAAAAAAAAGACAT
Length of 3' end seq. 701
Connected seq. ID CFG174P
Connected seq. 
>CFG174P.Seq
AATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGAC
ACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTT
TCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGA
ATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAA
ACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAG----------
TTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAG
TAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCA
AAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGA
TGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGA
TTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTG
TAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTAT
TTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAA
GGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACG
TTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAA
GTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACNAATCCAAATAAATA
TTATTGTATACCAACTTCAACAATTTTAACTGGATTAGTCAAGTTTCAAAAAAGAATTCA
ATCAANATTTCTTTTAAGAAAANAANAAAAAAAAAAGACAT
Length of connected seq. 991
Full length Seq ID -
Full length Seq. -
Length of full length seq. -