CFG167
Library CF
(Link to library)
Clone ID CFG167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13954-1
Original site URL
Representative seq. ID CFG167Z
(Link to Original site)
Representative DNA sequence
>CFG167 (CFG167Q) /CSM/CF/CFG1-C/CFG167Q.Seq.d/
XXXXXXXXXXCACCCAAAAGACTGTTGATGGTCCATCTGGTAAAGATTGGAGAGCTGGTA
GATCTGCCCTTTCAAACATTATCCCAGCCTCAACTGGTGCCGCCAAAGCTGTCGGTAAAG
TTTTACCAGCACTCAATGGTNAATTAACCGGTATGTCATTCCGTGTTCCAAATTGTGATG
TTTCAGTCGTCGATTTANCCGTCCGTCTTGAAAAGAAAGCCACCTATGAAGAAATCAAAA
AGGTCATGAAAGCTGCCTCTGAATCTGACAAANACAANAGATACATTGGTTACACTGAAG
ATGAAGTTGTCNCAACCTGACTTTATTGGTGAGACTCACTCTTCAATTTTCGATGCTCAC
TGCTGGTATCGCCTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---TQKTVDGPSGKDWRAGRSALSNIIPASTGAAKAVGKVLPALNGXLTGMSFRVPNCDV
SVVDLXVRLEKKATYEEIKKVMKAASESDKXXRYIGYTEDEVVXT*lyw*dslfnfrcsl
lvsp


Translated Amino Acid sequence (All Frames)
Frame A:
---TQKTVDGPSGKDWRAGRSALSNIIPASTGAAKAVGKVLPALNGXLTGMSFRVPNCDV
SVVDLXVRLEKKATYEEIKKVMKAASESDKXXRYIGYTEDEVVXT*lyw*dslfnfrcsl
lvsp


Frame B:
---pkrllmvhlvkigelvdlpfqtlsqpqlvppklsvkfyqhsmvn*pvchsvfqivmf
qssixpsvlkrkppmkkskrs*klplnltxtxdtlvtlkmklsqpdfigethssifdahc
wyrl


Frame C:
---pkdc*wsiw*rlesw*icpfkhypslnwcrqscr*sftstqwxinryvipcskl*cf
srrfxrps*keshl*rnqkghescl*i*qxqxihwlh*r*scxnltllvrltlqfsmlta
gia


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG167 (CFG167Q) /CSM/CF/CFG1-C/CFG167Q.Seq.d/ 694 0.0
VSK382 (VSK382Q) /CSM/VS/VSK3-D/VSK382Q.Seq.d/ 654 0.0
VSJ554 (VSJ554Q) /CSM/VS/VSJ5-C/VSJ554Q.Seq.d/ 654 0.0
VSB590 (VSB590Q) /CSM/VS/VSB5-D/VSB590Q.Seq.d/ 654 0.0
VSB168 (VSB168Q) /CSM/VS/VSB1-C/VSB168Q.Seq.d/ 654 0.0
VSA603 (VSA603Q) /CSM/VS/VSA6-A/VSA603Q.Seq.d/ 654 0.0
VFO172 (VFO172Q) /CSM/VF/VFO1-C/VFO172Q.Seq.d/ 654 0.0
VFL807 (VFL807Q) /CSM/VF/VFL8-A/VFL807Q.Seq.d/ 654 0.0
VFH617 (VFH617Q) /CSM/VF/VFH6-A/VFH617Q.Seq.d/ 654 0.0
VFH495 (VFH495Q) /CSM/VF/VFH4-D/VFH495Q.Seq.d/ 654 0.0

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 577 0.0 3
U55243|U55243.1 Dictyostelium discoideum glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, partial cds. 577 0.0 3
AL402531|AL402531.1 T7 end of clone AT0AA002F10 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 62 5e-20 4
BF636217|BF636217.1 NF077B10DT1F1080 Drought Medicago truncatula cDNA clone NF077B10DT 5', mRNA sequence. 44 3e-18 5
BU495005|BU495005.1 PfESToab82g05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence. 72 4e-17 3
BU496632|BU496632.1 PfESToab52g07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence. 72 5e-17 3
BI670607|BI670607.1 PfESToaa02a07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence. 72 6e-17 3
BI816321|BI816321.1 PfESToaa39a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence. 72 7e-17 3
BI815601|BI815601.1 PfESToaa30e06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96369 O96369 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ;, mRNA sequence. 72 7e-17 3
AF479765|AF479765.1 Plasmodium falciparum HB3 glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds. 72 2e-16 3
dna update 2004. 3. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q94469) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase;... 190 5e-51
U55243_1(U55243|pid:none) Dictyostelium discoideum glyceraldehyd... 190 5e-51
(Q8NK47) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase;... 147 1e-36
(Q9Y8E9) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase;... 146 8e-36
FJ810523_1(FJ810523|pid:none) Piriformospora indica strain DSM 1... 145 8e-36
AY522941_1(AY522941|pid:none) Diplopoda sp. SBH266145 glyceralde... 143 8e-36
EU281551_1(EU281551|pid:none) Actinidia deliciosa var. chlorocar... 147 8e-36
AJ246023_1(AJ246023|pid:none) Marchantia polymorpha mRNA for gly... 146 1e-35
DQ873395_1(DQ873395|pid:none) Marchantia polymorpha cytosolic gl... 146 1e-35
BT051304_1(BT051304|pid:none) Medicago truncatula clone MTYF1_F2... 146 1e-35
protein update 2009. 5.14
PSORT

psg: 0.47 gvh: 0.46 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for CFG167 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFG167Z
3' end seq.
>CFG167Z.Seq
----------CACCCAAAAGACTGTTGATGGTCCATCTGGTAAAGATTGGAGAGCTGGTA
GATCTGCCCTTTCAAACATTATCCCAGCCTCAACTGGTGCCGCCAAAGCTGTCGGTAAAG
TTTTACCAGCACTCAATGGTNAATTAACCGGTATGTCATTCCGTGTTCCAAATTGTGATG
TTTCAGTCGTCGATTTANCCGTCCGTCTTGAAAAGAAAGCCACCTATGAAGAAATCAAAA
AGGTCATGAAAGCTGCCTCTGAATCTGACAAANACAANAGATACATTGGTTACACTGAAG
ATGAAGTTGTCNCAACCTGACTTTATTGGTGAGACTCACTCTTCAATTTTCGATGCTCAC
TGCTGGTATCGCCTT
Length of 3' end seq. 365
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -