CFG161
Library CF
(Link to library)
Clone ID CFG161
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02000-1
Original site URL
Representative seq. ID CFG161Z
(Link to Original site)
Representative DNA sequence
>CFG161 (CFG161Q) /CSM/CF/CFG1-C/CFG161Q.Seq.d/
XXXXXXXXXXATGAAATTCATGTTCCTAGTATTCAATCTTTACTGGACACATTATGTAAT
CACCTATACTTGCTATAGTGTTGTATCTGGGTTGGTTGCAAGTTGGTATTTCTTTGCTGA
TGAAGATTTCAATGGTATGCCACCAAAACCATGCGCACACTCACTATATCGTTCCATGAC
TTCTTCATTTGGTTCAATTGCTTTTGGTTCTTTATTGGTTTGTTTGGTTCAAATGGTGCA
ATTCATTTGTAGAGGTTTTGCAAGAGTTCCAGGACTTACATCTTTGTTTTGTAATTGTCT
CCAGTTTATTGCATTGATCTTCACAAGAATGTTATATACTTTTAACATTTACACATTCTC
TATGGTTTCAATCTATGGTCAATCATTTTGTAATTCATCAAAGAAAACCTATAATTTAAT
GGTTAATAATAATGAAAAATTATTTGCAACTCATAATTATATGTTAATTACAATGCTATC
AGTTTCTTTATCAATGTTTTTAATAATTGGCTTCATTGTTACAATGATTATGGCAACAAT
TCAATTGGAAAACCAAGGTTGGTTATATGTACAATTGGTAATGTTTTTATTCATCCTCTA
TAAACC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---KFMFLVFNLYWTHYVITYTCYSVVSGLVASWYFFADEDFNGMPPKPCAHSLYRSMTS
SFGSIAFGSLLVCLVQMVQFICRGFARVPGLTSLFCNCLQFIALIFTRMLYTFNIYTFSM
VSIYGQSFCNSSKKTYNLMVNNNEKLFATHNYMLITMLSVSLSMFLIIGFIVTMIMATIQ
LENQGWLYVQLVMFLFILYK


Translated Amino Acid sequence (All Frames)
Frame A:
---*nscs*ysiftghim*spilaivlylgwlqvgisllmkismvchqnhahthyivp*l
lhlvqlllvlywfvwfkwcnsfvevlqefqdlhlcfvivssllh*ssqecyilltfthsl
wfqsmvnhfvihqrkpii*wliimknylqliiic*lqcyqflyqcf**lasllq*lwqqf
nwktkvgymynw*cfysssin


Frame B:
---eihvpsiqslldtlcnhlyll*cciwvgcklvflc**rfqwyatktmrtltisfhdf
fiwfncfwffiglfgsngaihl*rfckssrtyifvl*lspvycidlhknviyf*hlhily
gfnlwsiil*fikenl*fng****kiicns*lyvnynaisffinvfnnwlhcyndygnns
igkprlvictignvfihpl*t


Frame C:
---KFMFLVFNLYWTHYVITYTCYSVVSGLVASWYFFADEDFNGMPPKPCAHSLYRSMTS
SFGSIAFGSLLVCLVQMVQFICRGFARVPGLTSLFCNCLQFIALIFTRMLYTFNIYTFSM
VSIYGQSFCNSSKKTYNLMVNNNEKLFATHNYMLITMLSVSLSMFLIIGFIVTMIMATIQ
LENQGWLYVQLVMFLFILYK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG161 (CFG161Q) /CSM/CF/CFG1-C/CFG161Q.Seq.d/ 1181 0.0
AFG463 (AFG463Q) /CSM/AF/AFG4-C/AFG463Q.Seq.d/ 1168 0.0
SSM372 (SSM372Q) /CSM/SS/SSM3-C/SSM372Q.Seq.d/ 922 0.0
SSD416 (SSD416Q) /CSM/SS/SSD4-A/SSD416Q.Seq.d/ 773 0.0
AHB129 (AHB129Q) /CSM/AH/AHB1-B/AHB129Q.Seq.d/ 42 0.010
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 40 0.038
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/ 40 0.038
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/ 40 0.038
SSL330 (SSL330Q) /CSM/SS/SSL3-B/SSL330Q.Seq.d/ 40 0.038
SSL316 (SSL316Q) /CSM/SS/SSL3-A/SSL316Q.Seq.d/ 40 0.038

own update 2004. 5. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 7e-06 14
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 38 3e-04 10
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 32 0.004 22
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. 36 0.008 10
AL611932|AL611932.6 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-206A13. 34 0.012 9
AF303741|AF303741.1 Chilo iridescent virus complete genome. 32 0.017 10
AC025159|AC025159.28 Homo sapiens 12 BAC RP11-1082K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 34 0.023 9
AC131565|AC131565.1 Homo sapiens chromosome 5 clone RP11-1273L8, complete sequence. 32 0.027 9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 30 0.028 11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.054 12
dna update 2004. 3. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55CN8) RecName: Full=CTL-like protein DDB_G0269978; 406 e-112
(Q869R1) RecName: Full=CTL-like protein DDB_G0274487; &AC116957... 111 2e-23
AM494972_245(AM494972|pid:none) Leishmania braziliensis chromoso... 84 4e-15
(Q54IJ2) RecName: Full=CTL-like protein DDB_G0288717; 80 3e-14
FM992688_24(FM992688|pid:none) Candida dubliniensis CD36 chromos... 80 3e-14
(Q6CY85) RecName: Full=Protein PNS1; &CR382121_99(CR382121|pid:... 79 1e-13
(Q5AB93) RecName: Full=Protein PNS1; 78 2e-13
(Q75EG5) RecName: Full=Protein PNS1; &AE016814_300(AE016814|pid... 77 4e-13
AK221798_1(AK221798|pid:none) Arabidopsis thaliana mRNA for hypo... 77 5e-13
AM270022_39(AM270022|pid:none) Aspergillus niger contig An02c027... 76 6e-13
protein update 2009. 5.14
PSORT

psg: 0.94 gvh: 0.45 alm: 0.21 top: 0.50 tms: 0.20 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
24.0 %: mitochondrial
24.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for CFG161 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFG161Z
3' end seq.
>CFG161Z.Seq
----------ATGAAATTCATGTTCCTAGTATTCAATCTTTACTGGACACATTATGTAAT
CACCTATACTTGCTATAGTGTTGTATCTGGGTTGGTTGCAAGTTGGTATTTCTTTGCTGA
TGAAGATTTCAATGGTATGCCACCAAAACCATGCGCACACTCACTATATCGTTCCATGAC
TTCTTCATTTGGTTCAATTGCTTTTGGTTCTTTATTGGTTTGTTTGGTTCAAATGGTGCA
ATTCATTTGTAGAGGTTTTGCAAGAGTTCCAGGACTTACATCTTTGTTTTGTAATTGTCT
CCAGTTTATTGCATTGATCTTCACAAGAATGTTATATACTTTTAACATTTACACATTCTC
TATGGTTTCAATCTATGGTCAATCATTTTGTAATTCATCAAAGAAAACCTATAATTTAAT
GGTTAATAATAATGAAAAATTATTTGCAACTCATAATTATATGTTAATTACAATGCTATC
AGTTTCTTTATCAATGTTTTTAATAATTGGCTTCATTGTTACAATGATTATGGCAACAAT
TCAATTGGAAAACCAAGGTTGGTTATATGTACAATTGGTAATGTTTTTATTCATCCTCTA
TAAACC
Length of 3' end seq. 596
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -