CFG157 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFG157
Library	CF (Link to library)
Clone ID	CFG157 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11580-1\|Contig-U16527-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFG1-C/CFG157Q.Seq.d/
Representative seq. ID	CFG157P (Link to Original site)
Representative DNA sequence	>CFG157 (CFG157Q) /CSM/CF/CFG1-C/CFG157Q.Seq.d/ AATTGAAATGCAATCTATCACTGCTTTAGCTCATTTACATTCCTGTGTTTTATTTTTAAT TGATATTTCTGAACGTTGTGGTTATACAATTAAACAACAAGTTGATTTATTCTTTAGTAT TAAAGCATTATTTTTAAATAAACCATTATTAGTTGTATTAAATAAAATTGATGCAAGAAG ACCAGAAGATGTACCAGAAGATGATTGGAAATTAATTCAATCATTAGCAGATCCAGCAAG AGGTGGTATTGGTGGTACACATTTAATACCAATGTCAAATTTAACAGAGGAGGGTATTGC AAAGGTAAAGGATACAGCATGTTCTATACTTTTCGAAGAGAGAGTTGAGAAGAAATTGAA ATCAACTCGTATTGAAAAGGAGATTCATAGACTTCATTTAGCTCAACCACAAGCAAGAGA TAAGAAAGTACGTGCACCATGTATTCCAGAATCTGTAATTGCTGCAGCTCGTCAAGCTGA TATGGACGAGGAATCCGATTACAAGAAACCAACACTCACAGCTGCAATGATGGAAATGAT TGAAGAACATGAAAACGACGAGAAATACGCCCAAGGTATCATTCCAATCTATGATGTCAA CGCTTGGAAGAAGXXXXXXXXXXGAAGCTTTCCTCGAAGAGTTAAAGAATGCCGAAGACG AATGAAGAATCTGATCTCGATGAAGAGAACGAAGCACTCTATGACGAAATCCAAGAGAAG AAACACGAACTTCGTATCAATCATCAAATTAAAGACTCTTCAAAACCACAATTATCCAAA GGTCGTAGAGGTATCGATACTAAAGAGATGGCTTCTCATTTGAAATCTATGCATCATGAA GATGATGAAATCGGTGATATCATCCAAAGTGTACGTGATCATTCCAAGTCTCGTATCTCT GGTAAGAAACGTTCTCGTTCAGCCTCACGTTCAGACTCTCAAGCTCCAACCTCTGAAGAA AGAGGTCTCTCTCTCAATCGTTCAAAATCACGTCAACGTTCTACCACCAGAATCGCTTCT CCTGCTCCAGGTGAAGGTTTCCATGATTTGGCTCAAAAAGAAAAAGCTGATAAACTCGAT AAACGTTCTCGTAAGAAGAGAAATCAAGATGGTAGAAAAGGTGAATCCGATCGTCACGTT TACAATCTCATGCCAAAACATTTATTCTCTGGTAAACGTAGTGGTGGTACAAATATTTCA GATAAAATATTTAAATAT
sequence update	2001. 6. 1
Translated Amino Acid sequence	IEMQSITALAHLHSCVLFLIDISERCGYTIKQQVDLFFSIKALFLNKPLLVVLNKIDARR PEDVPEDDWKLIQSLADPARGGIGGTHLIPMSNLTEEGIAKVKDTACSILFEERVEKKLK STRIEKEIHRLHLAQPQARDKKVRAPCIPESVIAAARQADMDEESDYKKPTLTAAMMEMI EEHENDEKYAQGIIPIYDVNAWKK--- ---SFPRRVKECRRRMKNLISMKRTKHSMTKSKRRNTNFVSIIKLKTLQNHNYPKVVEVS ILKRWLLI*nlcimkmmksvisskvyviipslvslvrnvlvqphvqtlklqplkkevsls ivqnhvnvlppesllllqvkvsmiwlkkkklinsinvlvrreikmvekvnpivtftiscq niyslvnvvvvqifqikyln
Translated Amino Acid sequence (All Frames)	Frame A: nnaiyhcfssftflcfifnyftlwlynttsfilysiifktiisciknckk trrctrrleinsiisrsskrwywwytfntnvkfnrggyckgkgysmfytfrreseeie insykgdstsfssttskrestctmysricnccssssygrgirlqetnthscndgnd rtkrreirpryhsnlcqrlee--- ---eafleelknaederisrrerstlrnpreetrtsyqssnrlfkttiiqrsry ryrdgfsfeiyasrnryhpkctsfqvsylwetfsfsltfrlsssnlrkrsls qsfkitstfyhqnrfscsrrfpfgskrkstrtfseeksrwkrirssrlqsha ktfilwtwwykyfrnii Frame B: IEMQSITALAHLHSCVLFLIDISERCGYTIKQQVDLFFSIKALFLNKPLLVVLNKIDARR PEDVPEDDWKLIQSLADPARGGIGGTHLIPMSNLTEEGIAKVKDTACSILFEERVEKKLK STRIEKEIHRLHLAQPQARDKKVRAPCIPESVIAAARQADMDEESDYKKPTLTAAMMEMI EEHENDEKYAQGIIPIYDVNAWKK--- ---klssksrmpktneesdldeenealydeiqekkhelrinhqikdsskpqlskgrrgi dtkemashlksmhheddeigdiiqsvrdhsksrisgkkrsrsasrsdsqaptseerglsl nrsksrqrsttriaspapgegfhdlaqkekadkldkrsrkkrnqdgrkgesdrhvynlmp khlfsgkrsggtnisdkifky Frame C: lkcnlsllliyipvfyfliflnvvviqlnnkliyslvlkhyfinhylyiklmqed qkmyqkmignfnhqiqqevvlvvhiyqcqiqrrvlqrriqhvlyfskrelrrnn qlvlkrrfidfilnhkqeirkyvhhvfqnlllqlvkliwtrnpitrnqhsqlqwkl knmkttrntpkvsfqsmmstlgr--- ---SFPRRVKECRRRMKNLISMKRTKHSMTKSKRRNTNFVSIIKLKTLQNHNYPKVVEVS ILKRWLLInlcimkmmksvisskvyviipslvslvrnvlvqphvqtlklqplkkevsls ivqnhvnvlppesllllqvkvsmiwlkkkklinsinvlvrreikmvekvnpivtftiscq niyslvnvvvvqifqikyln
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFG157 (CFG157Q) /CSM/CF/CFG1-C/CFG157Q.Seq.d/ 2355 0.0 CFF783 (CFF783Q) /CSM/CF/CFF7-D/CFF783Q.Seq.d/ 1142 0.0 VHK128 (VHK128Q) /CSM/VH/VHK1-B/VHK128Q.Seq.d/ 1011 0.0 VHB381 (VHB381Q) /CSM/VH/VHB3-D/VHB381Q.Seq.d/ 967 0.0 CHK246 (CHK246Q) /CSM/CH/CHK2-B/CHK246Q.Seq.d/ 848 0.0 VHN175 (VHN175Q) /CSM/VH/VHN1-D/VHN175Q.Seq.d/ 805 0.0 VHA814 (VHA814Q) /CSM/VH/VHA8-A/VHA814Q.Seq.d/ 803 0.0 VHO877 (VHO877Q) /CSM/VH/VHO8-D/VHO877Q.Seq.d/ 783 0.0 VHB452 (VHB452Q) /CSM/VH/VHB4-C/VHB452Q.Seq.d/ 781 0.0 VHK275 (VHK275Q) /CSM/VH/VHK2-D/VHK275Q.Seq.d/ 779 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 32 4e-06 19 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 7e-05 13 AC121115\|AC121115.5 Mus musculus clone RP23-239F23, WORKING DRAFT SEQUENCE, 10 unordered pieces. 34 1e-04 12 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 36 2e-04 15 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 36 0.002 13 AL732410\|AL732410.6 Mouse DNA sequence from clone RP23-91L2 on chromosome X. 34 0.004 11 Z82212\|Z82212.3 Human DNA sequence from clone RP3-481A17 on chromosome X. 36 0.005 10 AP003187\|AP003187.2 Clostridium perfringens str. 13 DNA, complete genome, section 3/10. 38 0.005 12 AL356777\|AL356777.4 Human DNA sequence * SEQUENCING CANCELLED * from clone RP11-312M21. 34 0.006 9 AC023106\|AC023106.3 Homo sapiens chromosome 17 clone RP11-64J4, WORKING DRAFT SEQUENCE, 24 unordered pieces. 34 0.006 9
dna update	2004. 3. 7
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54N72) RecName: Full=Probable nucleolar GTP-binding protein 1; 407 e-112 AP003759_21(AP003759\|pid:none) Oryza sativa Japonica Group genom... 152 3e-35 (Q9C6I8) RecName: Full=Probable nucleolar GTP-binding protein 1;... 150 8e-35 BT029268_1(BT029268\|pid:none) Drosophila melanogaster IP07471 fu... 150 1e-34 AK222861_1(AK222861\|pid:none) Homo sapiens mRNA for G protein-bi... 149 1e-34 BC033784_1(BC033784\|pid:none) Homo sapiens GTP binding protein 4... 149 2e-34 AK295231_1(AK295231\|pid:none) Homo sapiens cDNA FLJ53992 complet... 149 2e-34 AK001548_1(AK001548\|pid:none) Homo sapiens cDNA FLJ10686 fis, cl... 149 2e-34 AF120334_1(AF120334\|pid:none) Homo sapiens GTP-binding protein N... 149 2e-34 AB168296_1(AB168296\|pid:none) Macaca fascicularis testis cDNA cl... 149 2e-34
protein update	2009. 5.14
PSORT	psg: 0.75 gvh: 0.44 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.15 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 40.0 %: cytoplasmic 8.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: Golgi >> prediction for CFG157 is nuc
5' end seq. ID	CFG157F
5' end seq.	>CFG157F.Seq AATTGAAATGCAATCTATCACTGCTTTAGCTCATTTACATTCCTGTGTTTTATTTTTAAT TGATATTTCTGAACGTTGTGGTTATACAATTAAACAACAAGTTGATTTATTCTTTAGTAT TAAAGCATTATTTTTAAATAAACCATTATTAGTTGTATTAAATAAAATTGATGCAAGAAG ACCAGAAGATGTACCAGAAGATGATTGGAAATTAATTCAATCATTAGCAGATCCAGCAAG AGGTGGTATTGGTGGTACACATTTAATACCAATGTCAAATTTAACAGAGGAGGGTATTGC AAAGGTAAAGGATACAGCATGTTCTATACTTTTCGAAGAGAGAGTTGAGAAGAAATTGAA ATCAACTCGTATTGAAAAGGAGATTCATAGACTTCATTTAGCTCAACCACAAGCAAGAGA TAAGAAAGTACGTGCACCATGTATTCCAGAATCTGTAATTGCTGCAGCTCGTCAAGCTGA TATGGACGAGGAATCCGATTACAAGAAACCAACACTCACAGCTGCAATGATGGAAATGAT TGAAGAACATGAAAACGACGAGAAATACGCCCAAGGTATCATTCCAATCTATGATGTCAA CGCTTGGAAGAAG----------
Length of 5' end seq.	613
3' end seq. ID	CFG157Z
3' end seq.	>CFG157Z.Seq ----------GAAGCTTTCCTCGAAGAGTTAAAGAATGCCGAAGACGAATGAAGAATCTG ATCTCGATGAAGAGAACGAAGCACTCTATGACGAAATCCAAGAGAAGAAACACGAACTTC GTATCAATCATCAAATTAAAGACTCTTCAAAACCACAATTATCCAAAGGTCGTAGAGGTA TCGATACTAAAGAGATGGCTTCTCATTTGAAATCTATGCATCATGAAGATGATGAAATCG GTGATATCATCCAAAGTGTACGTGATCATTCCAAGTCTCGTATCTCTGGTAAGAAACGTT CTCGTTCAGCCTCACGTTCAGACTCTCAAGCTCCAACCTCTGAAGAAAGAGGTCTCTCTC TCAATCGTTCAAAATCACGTCAACGTTCTACCACCAGAATCGCTTCTCCTGCTCCAGGTG AAGGTTTCCATGATTTGGCTCAAAAAGAAAAAGCTGATAAACTCGATAAACGTTCTCGTA AGAAGAGAAATCAAGATGGTAGAAAAGGTGAATCCGATCGTCACGTTTACAATCTCATGC CAAAACATTTATTCTCTGGTAAACGTAGTGGTGGTACAAATATTTCAGATAAAATATTTA AATAT
Length of 3' end seq.	595
Connected seq. ID	CFG157P
Connected seq.	>CFG157P.Seq AATTGAAATGCAATCTATCACTGCTTTAGCTCATTTACATTCCTGTGTTTTATTTTTAAT TGATATTTCTGAACGTTGTGGTTATACAATTAAACAACAAGTTGATTTATTCTTTAGTAT TAAAGCATTATTTTTAAATAAACCATTATTAGTTGTATTAAATAAAATTGATGCAAGAAG ACCAGAAGATGTACCAGAAGATGATTGGAAATTAATTCAATCATTAGCAGATCCAGCAAG AGGTGGTATTGGTGGTACACATTTAATACCAATGTCAAATTTAACAGAGGAGGGTATTGC AAAGGTAAAGGATACAGCATGTTCTATACTTTTCGAAGAGAGAGTTGAGAAGAAATTGAA ATCAACTCGTATTGAAAAGGAGATTCATAGACTTCATTTAGCTCAACCACAAGCAAGAGA TAAGAAAGTACGTGCACCATGTATTCCAGAATCTGTAATTGCTGCAGCTCGTCAAGCTGA TATGGACGAGGAATCCGATTACAAGAAACCAACACTCACAGCTGCAATGATGGAAATGAT TGAAGAACATGAAAACGACGAGAAATACGCCCAAGGTATCATTCCAATCTATGATGTCAA CGCTTGGAAGAAG----------GAAGCTTTCCTCGAAGAGTTAAAGAATGCCGAAGACG AATGAAGAATCTGATCTCGATGAAGAGAACGAAGCACTCTATGACGAAATCCAAGAGAAG AAACACGAACTTCGTATCAATCATCAAATTAAAGACTCTTCAAAACCACAATTATCCAAA GGTCGTAGAGGTATCGATACTAAAGAGATGGCTTCTCATTTGAAATCTATGCATCATGAA GATGATGAAATCGGTGATATCATCCAAAGTGTACGTGATCATTCCAAGTCTCGTATCTCT GGTAAGAAACGTTCTCGTTCAGCCTCACGTTCAGACTCTCAAGCTCCAACCTCTGAAGAA AGAGGTCTCTCTCTCAATCGTTCAAAATCACGTCAACGTTCTACCACCAGAATCGCTTCT CCTGCTCCAGGTGAAGGTTTCCATGATTTGGCTCAAAAAGAAAAAGCTGATAAACTCGAT AAACGTTCTCGTAAGAAGAGAAATCAAGATGGTAGAAAAGGTGAATCCGATCGTCACGTT TACAATCTCATGCCAAAACATTTATTCTCTGGTAAACGTAGTGGTGGTACAAATATTTCA GATAAAATATTTAAATAT
Length of connected seq.	1208
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas