NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG115
Library CF
(Link to library)
Clone ID CFG115
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03237-1
Original site URL
Representative seq. ID CFG115E
(Link to Original site)
Representative DNA sequence 
>CFG115 (CFG115Q) /CSM/CF/CFG1-A/CFG115Q.Seq.d/
ATTTTTTATTTAATTATTAATTTTTTGGTTTAATTAAAATTTTACTTTGAAGGGTAAATA
GAATAATATGAACGGCTTTTTAAAGAGCCAACTAGAAAATAAAACAAATGCAACAACAAC
AACAACAACAAGATATTGTAATAATGACGAATCATGCAATGATGAAAATTTGTGTACAAA
TGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAATATTTCATGTGATGATGATAA
TGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATGCTTTCATAAGAGGGTGGTATG
TGATGATAATGATAAATGTACTGATAATATATGTAATCCTGAGACTGGAACATGCTCATT
TAGAAGAAGAATATGTACTGATAATAATGATTGCACAATGGACTGGTGTAATCAATTGAC
AGGAGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGATTATAATAGTTGTACAATTGA
TGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGAACTTGTGATGATAGATGTGT
TTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTATTCACACTCCAATATCATGTGA
CGACAATAATGATTGTACCATTGATAATTGTGATTGTAAACTTGGCTGTATTCATAAAGA
ATTGCCCGTTGATGATTTTAATAATTGTACATTTGACCAATGTTCCCATGAAGAAGGTAT
AACTCACACTCCAATTTCCTGTGATGATAACAATGATTGTACAACTGATAGTTGTGATAT
TTCAATTGGTTGTATACATGATCAAATTCCTGATTGTACTATTAATACCTCATCTAATAA
TTCTCAAAATAATCCAAAAGATTGTATTGGTGAAAATTGTATAAATATTCCATTTTGTTC
AATCAAAGATAAAAAGTGTTTAGAATTGGTTGAAGAAATAAAAAAAAATCAAACTTCTCA
ATTCCCTCCAACTTCTTCTTCCTCTTCATCTCATTCTCAGATTTCAAAAAATAAAGAAAT
TATAATAATATCAACATATTTTTAGGTACTTTAACATAATCTCTAATTTTAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence 
ffi*llifwfn*nftlkgk*NNMNGFLKSQLENKTNATTTTTTRYCNNDESCNDENLCTN
EMCDPVIGCIYENISCDDDNGCTKDFCDPLTGCFHKRVVCDDNDKCTDNICNPETGTCSF
RRRICTDNNDCTMDWCNQLTGECVYQPVLVCEDYNSCTIDVCNEYKGCQFFNRTCDDRCV
CTIDTCKNSTGCIHTPISCDDNNDCTIDNCDCKLGCIHKELPVDDFNNCTFDQCSHEEGI
THTPISCDDNNDCTTDSCDISIGCIHDQIPDCTINTSSNNSQNNPKDCIGENCINIPFCS
IKDKKCLELVEEIKKNQTSQFPPTSSSSSSHSQISKNKEIIIISTYF*vl*hnl*f*
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyliinflv*lkfyfeg*ie*yerlfkeptrk*nkcnnnnnnkil***rimq**kfvyk
*nv*ssywmyl*kyfm****wmykrfl*sidwmls*eggm*****my**ym*s*dwnmli
*kknmy****lhnglv*sidrrmclstgfsl*rl**lyn*cl**iqglsif**nl***mc
lyn*yl*kfnwlyshsnim*rq**lyh**l*l*twlys*riar**f**lyi*pmfp*rry
nshsnfl***q*lyn**l*yfnwlyt*sns*lyy*yli**fsk*skrlyw*klykysilf
nqr*kvfrig*rnkkksnfsipsnffflfisfsdfkk*rnynniniflgtlt*slil


Frame B:
ffi*llifwfn*nftlkgk*NNMNGFLKSQLENKTNATTTTTTRYCNNDESCNDENLCTN
EMCDPVIGCIYENISCDDDNGCTKDFCDPLTGCFHKRVVCDDNDKCTDNICNPETGTCSF
RRRICTDNNDCTMDWCNQLTGECVYQPVLVCEDYNSCTIDVCNEYKGCQFFNRTCDDRCV
CTIDTCKNSTGCIHTPISCDDNNDCTIDNCDCKLGCIHKELPVDDFNNCTFDQCSHEEGI
THTPISCDDNNDCTTDSCDISIGCIHDQIPDCTINTSSNNSQNNPKDCIGENCINIPFCS
IKDKKCLELVEEIKKNQTSQFPPTSSSSSSHSQISKNKEIIIISTYF*vl*hnl*f*


Frame C:
flfny*ffglikill*rvnrii*taf*ran*kikqmqqqqqqqdivimtnhammkicvqm
kcviqlldvfmkifhvmmimdvqkifvih*ldafirgwyvmiminvliiyvilrlehahl
eeeyvliimiaqwtgvin*qenvfinrf*fvkiiivvqlmfvmntrvvnflielvmidvf
vqlilvkiqlvvftlqyhvttimivpliivivnlavfikncplmiliivhltnvpmkkv*
ltlqfpvmitmivqlivvifqlvvymikflivlliphliilkiiqkivlvkiv*ifhfvq
skiksv*nwlkk*kkikllnslqlllplhlilrfqkikkl**yqhifryfniisnfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG115 (CFG115Q) /CSM/CF/CFG1-A/CFG115Q.Seq.d/                       1814   0.0
SFC228 (SFC228Q) /CSM/SF/SFC2-B/SFC228Q.Seq.d/                       1308   0.0
CFG644 (CFG644Q) /CSM/CF/CFG6-B/CFG644Q.Seq.d/                       1304   0.0
SFA234 (SFA234Q) /CSM/SF/SFA2-B/SFA234Q.Seq.d/                        710   0.0
SFB849 (SFB849Q) /CSM/SF/SFB8-C/SFB849Q.Seq.d/                        523   e-147
SLE276 (SLE276Q) /CSM/SL/SLE2-D/SLE276Q.Seq.d/                         52   2e-05
SLE275 (SLE275Q) /CSM/SL/SLE2-D/SLE275Q.Seq.d/                         52   2e-05
SLE266 (SLE266Q) /CSM/SL/SLE2-C/SLE266Q.Seq.d/                         52   2e-05
SFI605 (SFI605Q) /CSM/SF/SFI6-A/SFI605Q.Seq.d/                         52   2e-05
SFF368 (SFF368Q) /CSM/SF/SFF3-C/SFF368Q.Seq.d/                         52   2e-05
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-10  21
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36   1e-09  17
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   2e-09  26
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    46   1e-07  16
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42   1e-07  17
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   8e-07  19
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    36   1e-06  19
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   5e-06  16
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   7e-06  16
X78948|X78948.1 D.minutum ecmB gene.                               38   8e-06  4
dna update 2003.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   188   2e-46
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   182   1e-44
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   182   2e-44
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   176   1e-42
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   172   2e-41
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   159   2e-37
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                108   2e-22
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                103   1e-20
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 95   5e-18
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 92   3e-17
protein update 2009. 6.30
PSORT 

 psg: 0.48  gvh: 0.38  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for CFG115 is nuc
5' end seq. ID CFG115F
5' end seq. 
>CFG115F.Seq
ATTTTTTATTTAATTATTAATTTTTTGGTTTAATTAAAATTTTACTTTGAAGGGTAAATA
GAATAATATGAACGGCTTTTTAAAGAGCCAACTAGAAAATAAAACAAATGCAACAACAAC
AACAACAACAAGATATTGTAATAATGACGAATCATGCAATGATGAAAATTTGTGTACAAA
TGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAATATTTCATGTGATGATGATAA
TGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATGCTTTCATAAGAGGGTGGTATG
TGATGATAATGATAAATGTACTGATAATATATGTAATCCTGAGACTGGAACATGCTCATT
TAGAAGAAGAATATGTACTGATAATAATGATTGCACAATGGACTGGTGTAATCAATTGAC
AGGAGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGATTATAATAGTTGTACAATTGA
TGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGAACTTGTGATGATAGATGTGT
TTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTATTCACACTCCAATATCATGTGA
CGACAATAATGATTGTACCATTGATAATTGTGATTGTAAACTTGGCTGTATTCATAAAGA
ATTGCCCGTTGATGATTTTAATAATTGTACATTTGACCAATGTTCCCATGAAGAANGTAT
AACTCACACTNCAATTTCCTGTGATGATAACAATGATTGTACACTGATAGNTGNGAT---
-------
Length of 5' end seq. 777
3' end seq. ID CFG115Z
3' end seq. 
>CFG115Z.Seq
----------CTGGTGTAATCAATTGACAGGANAATGTGTTTATCAACCGGTTTTAGTTT
GTGAAGATTATAATAGTTGTACAATTGATGTTTGTAATGAATACAAGGGTTGTCAATTTT
TTAATAGAACTTGTGATGATAGATGTGTTTGTACAATTGATACTTGTAAAAATTCAACTG
GTTGTATTCACACTCCAATATCATGTGACGACAATAATGATTGTACCATTGATAATTGTG
ATTGTAAACTTGGCTGTATTCATAAAGAATTGCCCGTTGATGATTTTAATAATTGTACAT
TTGACCAATGTTCCCATGAAGAAGGTATAACTCACACTCCAATTTCCTGTGATGATAACA
ATGATTGTACAACTGATAGTTGTGATATTTCAATTGGTTGTATACATGATCAAATTCCTG
ATTGTACTATTAATACCTCATCTAATAATTCTCAAAATAATCCAAAAGATTGTATTGGTG
AAAATTGTATAAATATTCCATTTTGTTCAATCAAAGATAAAAAGTGTTTAGAATTGGTTG
AAGAAATAAAAAAAAATCAAACTTCTCAATTCCCTCCAACTTCTTCTTCCTCTTCATCTC
ATTCTCAGATTTCAAAAAATAAAGAAATTATAATAATATCAACATATTTTTAGGTACTTT
AACATAATCTCTAATTTTAAA
Length of 3' end seq. 671
Connected seq. ID CFG115P
Connected seq. 
>CFG115P.Seq
ATTTTTTATTTAATTATTAATTTTTTGGTTTAATTAAAATTTTACTTTGAAGGGTAAATA
GAATAATATGAACGGCTTTTTAAAGAGCCAACTAGAAAATAAAACAAATGCAACAACAAC
AACAACAACAAGATATTGTAATAATGACGAATCATGCAATGATGAAAATTTGTGTACAAA
TGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAATATTTCATGTGATGATGATAA
TGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATGCTTTCATAAGAGGGTGGTATG
TGATGATAATGATAAATGTACTGATAATATATGTAATCCTGAGACTGGAACATGCTCATT
TAGAAGAAGAATATGTACTGATAATAATGATTGCACAATGGACTGGTGTAATCAATTGAC
AGGAGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGATTATAATAGTTGTACAATTGA
TGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGAACTTGTGATGATAGATGTGT
TTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTATTCACACTCCAATATCATGTGA
CGACAATAATGATTGTACCATTGATAATTGTGATTGTAAACTTGGCTGTATTCATAAAGA
ATTGCCCGTTGATGATTTTAATAATTGTACATTTGACCAATGTTCCCATGAAGAANGTAT
AACTCACACTNCAATTTCCTGTGATGATAACAATGATTGTACACTGATAGNTGNGAT---
-------CTGGTGTAATCAATTGACAGGANAATGTGTTTATCAACCGGTTTTAGTTTGTG
AAGATTATAATAGTTGTACAATTGATGTTTGTAATGAATACAAGGGTTGTCAATTTTTTA
ATAGAACTTGTGATGATAGATGTGTTTGTACAATTGATACTTGTAAAAATTCAACTGGTT
GTATTCACACTCCAATATCATGTGACGACAATAATGATTGTACCATTGATAATTGTGATT
GTAAACTTGGCTGTATTCATAAAGAATTGCCCGTTGATGATTTTAATAATTGTACATTTG
ACCAATGTTCCCATGAAGAAGGTATAACTCACACTCCAATTTCCTGTGATGATAACAATG
ATTGTACAACTGATAGTTGTGATATTTCAATTGGTTGTATACATGATCAAATTCCTGATT
GTACTATTAATACCTCATCTAATAATTCTCAAAATAATCCAAAAGATTGTATTGGTGAAA
ATTGTATAAATATTCCATTTTGTTCAATCAAAGATAAAAAGTGTTTAGAATTGGTTGAAG
AAATAAAAAAAAATCAAACTTCTCAATTCCCTCCAACTTCTTCTTCCTCTTCATCTCATT
CTCAGATTTCAAAAAATAAAGAAATTATAATAATATCAACATATTTTTAGGTACTTTAAC
ATAATCTCTAATTTTAAA
Length of connected seq. 1448
Full length Seq ID CFG115E
Full length Seq. 
>CFG115E.Seq
ATTTTTTATTTAATTATTAATTTTTTGGTTTAATTAAAATTTTACTTTGAAGGGTAAATA
GAATAATATGAACGGCTTTTTAAAGAGCCAACTAGAAAATAAAACAAATGCAACAACAAC
AACAACAACAAGATATTGTAATAATGACGAATCATGCAATGATGAAAATTTGTGTACAAA
TGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAATATTTCATGTGATGATGATAA
TGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATGCTTTCATAAGAGGGTGGTATG
TGATGATAATGATAAATGTACTGATAATATATGTAATCCTGAGACTGGAACATGCTCATT
TAGAAGAAGAATATGTACTGATAATAATGATTGCACAATGGACTGGTGTAATCAATTGAC
AGGAGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGATTATAATAGTTGTACAATTGA
TGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGAACTTGTGATGATAGATGTGT
TTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTATTCACACTCCAATATCATGTGA
CGACAATAATGATTGTACCATTGATAATTGTGATTGTAAACTTGGCTGTATTCATAAAGA
ATTGCCCGTTGATGATTTTAATAATTGTACATTTGACCAATGTTCCCATGAAGAAGGTAT
AACTCACACTCCAATTTCCTGTGATGATAACAATGATTGTACAACTGATAGTTGTGATAT
TTCAATTGGTTGTATACATGATCAAATTCCTGATTGTACTATTAATACCTCATCTAATAA
TTCTCAAAATAATCCAAAAGATTGTATTGGTGAAAATTGTATAAATATTCCATTTTGTTC
AATCAAAGATAAAAAGTGTTTAGAATTGGTTGAAGAAATAAAAAAAAATCAAACTTCTCA
ATTCCCTCCAACTTCTTCTTCCTCTTCATCTCATTCTCAGATTTCAAAAAATAAAGAAAT
TATAATAATATCAACATATTTTTAGGTACTTTAACATAATCTCTAATTTTAAA
Length of full length seq. 1073