>CFF884 (CFF884Q) /CSM/CF/CFF8-D/CFF884Q.Seq.d/
TTTTATTTTTTATACATTAATTTTTTTTTAAAAAAAAATTATTTAATTTAAATTAACAAA
GATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAATTCCACATGATTCAAT
AAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCA
AGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCC
ACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCACAATCCCAATTTCAGA
TTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAA
AGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAAAGAAATGTCCAATCAC
TGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCTCAAGCACATATGTCGC
CAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCA
AGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTATTCGCTGAAGCCAXXXX
XXXXXXGTTAAAGATCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGAT
TTCGCCAAATTCGATGGTATTTTAGATCTTGCTTTCCAATCCATCTCTGTTAATTCAATT
CCACCAGTCTTTTACAACATGTTATCACAAGGTTTAGTTTCATCAACACTCTTCTCCTTC
TGGTTATCAAGAACTCCAGGTGCCAACGGTGGTGAACTCTCATTCGGTTCAATCGATAAC
ACCAAATACACTGGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGAATTC
GTTATGGATGACTTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCAC
GCAATTTGCGATTCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTC
AATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTT
ATCAACACCTTACCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCA
AAAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATG
GGTATCGAGTTAAACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTAC
TATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAA
ATTTTTTTAATTAATTTATATTTAAGNATAGAAATAAAAC

fifytliff*kkii*fkltkilahrfqqrffy*SIPHDSIKGKMKLLILTLFLATIVLAQ
ALTVPLNFHQASRESRRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITIGTPGQAFK
VVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQ
DSVTVGSLTVKDQLFAEA---

---VKDQLFAEATAEPGIAFDFAKFDGILDLAFQSISVNSIPPVFYNMLSQGLVSSTLFS
FWLSRTPGANGGELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTC
HAICDSGTSLIAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLT
PKEYVLEVTEFGKTECLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAIQG
*iflinlylxieik

Frame A:
fyflyinfflkknyli*inkdfgaqistkifllinst*fnkgeneityfnfifsyycfss
sfnstiklpssfkri*kksstkmvkqiicsqcwyhnpnfrf*rcsilwchyhwyprsslq
ssfrywfiqlvdsikemsnhcccm*ft*qi*qrclkhicrqrn*fhhpir*wcyvrfcls
rfrhcwfinc*rsiir*s---

---VKDQLFAEATAEPGIAFDFAKFDGILDLAFQSISVNSIPPVFYNMLSQGLVSSTLFS
FWLSRTPGANGGELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTC
HAICDSGTSLIAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLT
PKEYVLEVTEFGKTECLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAIQG
*iflinlylxieik

Frame B:
fifytliff*kkii*fkltkilahrfqqrffy*SIPHDSIKGKMKLLILTLFLATIVLAQ
ALTVPLNFHQASRESRRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITIGTPGQAFK
VVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQ
DSVTVGSLTVKDQLFAEA---

---lkinyslkplpnqvllsispnsmvf*illsnpslliqfhqsfttcyhkv*fhqhssp
sgyqelqvptvvnshsvqsitpntlvtlptsh*ptkpignslwmtllsmvnqlvsvvllv
tqfaiqvhhsllvqwlillpsmkn*vlss*mvkvsslivalstpyqmlpspllvvnlf*l
qkntf*kllsserlnv*vdlwvss*tweisgslvmfsslltilysilvinklvsqlpfkv
kff*liyi*x*k*n

Frame C:
lffih*fffkkklfnln*qrfwrtdfnkdffinqfhmiq*rgk*nylf*lyf*lllf*lk
l*qyh*tsiklqenleeefhkngqtdyllsmlvpqsqfqilkmlntmvplplvpqvkpsk
*fsilvhptcgfhqrnvqslllhviyitnitavpqahmsptelispsntvvvlcqvlslk
ipsllvh*llkinyslkp---

---*rsiir*shcrtrycfrfrqirwyfrscfpihlc*fnstsllqhvitrfsfintlll
lviknsrcqrw*tlirfnr*hqihw*hylrpinqrnllgiryg*lcyrwsiswflwyyls
rnlrfryithcwsng*yycpq*kircchlkw*rcll*l*ryqhltkcyhhrcws*icfns
krirfrsy*vrkd*mfewiygyrvkhgkfldpw*cfhlcllycirfw**tswfrnchsrl
nffn*fifkxrnk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF884 (CFF884Q) /CSM/CF/CFF8-D/CFF884Q.Seq.d/                       2440   0.0
VFN222 (VFN222Q) /CSM/VF/VFN2-A/VFN222Q.Seq.d/                       1439   0.0
VFL761 (VFL761Q) /CSM/VF/VFL7-C/VFL761Q.Seq.d/                       1439   0.0
VFL385 (VFL385Q) /CSM/VF/VFL3-D/VFL385Q.Seq.d/                       1439   0.0
VFK659 (VFK659Q) /CSM/VF/VFK6-C/VFK659Q.Seq.d/                       1439   0.0
VFG570 (VFG570Q) /CSM/VF/VFG5-C/VFG570Q.Seq.d/                       1439   0.0
VFG218 (VFG218Q) /CSM/VF/VFG2-A/VFG218Q.Seq.d/                       1439   0.0
VFF759 (VFF759Q) /CSM/VF/VFF7-C/VFF759Q.Seq.d/                       1439   0.0
VFF495 (VFF495Q) /CSM/VF/VFF4-D/VFF495Q.Seq.d/                       1439   0.0
VFE438 (VFE438Q) /CSM/VF/VFE4-B/VFE438Q.Seq.d/                       1439   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D.   1409   0.0    2
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2.  1409   0.0    3
AX059531|AX059531.1 Sequence 264 from Patent WO0055325.            62   2e-05  1
AF076243|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence.    62   2e-05  1
BE525959|BE525959.1 M64C07STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone 600034526R1 5', mRNA sequence.    62   2e-05  1
BX827174|BX827174.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone  GSLTLS1ZB10 of Adult vegetative tissue of strain col-0 of  Arabidopsis thaliana (thale cress).    62   2e-05  1
CD825453|CD825453.1 BN25.060N03F011129 BN25 Brassica napus cDNA clone BN25060N03, mRNA sequence.    62   2e-05  1
CB264579|CB264579.1 51-E015023-035-004-F13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000F134Q 5-PRIME, mRNA sequence.    62   2e-05  1
BX829292|BX829292.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone  GSLTSIL89ZE03 of Silique of strain col-0 of Arabidopsis thaliana  (thale cress).    62   2e-05  1
AL161500|AL161500.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12.    62   2e-05  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ...   241   e-102
(Q03168) RecName: Full=Lysosomal aspartic protease;          EC=...   243   e-101
DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c...   235   1e-99
EF070454_1(EF070454|pid:none) Maconellicoccus hirsutus clone WHM...   239   2e-99
BT080419_1(BT080419|pid:none) Caligus clemensi clone ccle-evs-50...   245   7e-99
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ...   229   2e-97
DQ909010_1(DQ909010|pid:none) Clonorchis sinensis aspartic prote...   241   2e-97
FJ168036_1(FJ168036|pid:none) Fasciola hepatica cathepsin D-like...   237   3e-96
FN316575_1(FN316575|pid:none) Schistosoma japonicum isolate Anhu...   228   1e-94
DQ131585_1(DQ131585|pid:none) Opisthorchis viverrini cathepsin D...   239   2e-94

 psg: 0.86  gvh: 0.77  alm: 0.42  top: 0.60  tms: 0.00  mit: 0.32  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for CFF884 is exc

>CFF884F.Seq
TTTTATTTTTTATACATTAATTTTTTTTTAAAAAAAAATTATTTAATTTAAATTAACAAA
GATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAATTCCACATGATTCAAT
AAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCA
AGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCC
ACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCACAATCCCAATTTCAGA
TTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAA
AGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAAAGAAATGTCCAATCAC
TGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCTCAAGCACATATGTCGC
CAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCA
AGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTATTCGCTGAAGCCA----
------

>CFF884Z.Seq
----------GTTAAAGATCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTT
CGATTTCGCCAAATTCGATGGTATTTTAGATCTTGCTTTCCAATCCATCTCTGTTAATTC
AATTCCACCAGTCTTTTACAACATGTTATCACAAGGTTTAGTTTCATCAACACTCTTCTC
CTTCTGGTTATCAAGAACTCCAGGTGCCAACGGTGGTGAACTCTCATTCGGTTCAATCGA
TAACACCAAATACACTGGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGA
ATTCGTTATGGATGACTTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTG
TCACGCAATTTGCGATTCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGC
CCTCAATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAG
CGTTATCAACACCTTACCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAAC
TCCAAAAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATT
TATGGGTATCGAGTTAAACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGC
TTACTATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGG
TTAAATTTTTTTAATTAATTTATATTTAAGNATAGAAATAAAAC

>CFF884P.Seq
TTTTATTTTTTATACATTAATTTTTTTTTAAAAAAAAATTATTTAATTTAAATTAACAAA
GATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAATTCCACATGATTCAAT
AAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTACTATTGTTTTAGCTCA
AGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAATCTAGAAGAAGAGTTCC
ACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCACAATCCCAATTTCAGA
TTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCCCAGGTCAAGCCTTCAA
AGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAAAGAAATGTCCAATCAC
TGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCTCAAGCACATATGTCGC
CAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGTCAGGTTTTGTCTCTCA
AGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTATTCGCTGAAGCCA----
------GTTAAAGATCAATTATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGAT
TTCGCCAAATTCGATGGTATTTTAGATCTTGCTTTCCAATCCATCTCTGTTAATTCAATT
CCACCAGTCTTTTACAACATGTTATCACAAGGTTTAGTTTCATCAACACTCTTCTCCTTC
TGGTTATCAAGAACTCCAGGTGCCAACGGTGGTGAACTCTCATTCGGTTCAATCGATAAC
ACCAAATACACTGGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGAATTC
GTTATGGATGACTTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCAC
GCAATTTGCGATTCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTC
AATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTT
ATCAACACCTTACCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCA
AAAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATG
GGTATCGAGTTAAACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTAC
TATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAA
ATTTTTTTAATTAATTTATATTTAAGNATAGAAATAAAAC