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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF880
Library CF
(Link to library)
Clone ID CFF880
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12922-1
Original site URL
Representative seq. ID CFF880Z
(Link to Original site)
Representative DNA sequence 
>CFF880 (CFF880Q) /CSM/CF/CFF8-D/CFF880Q.Seq.d/
XXXXXXXXXXTAGATGCAAGAGGTGAAGTTGATGAATGTGCATCATTTAAATGTGGTGGT
CGTTGGTTAGTTGATGGCGAACCAGTTCAATTTCCACAACCATTTGGTAGAAGTTTATAT
CCAGAGGAAACCTATGTAAATGAAATTGATGAAAAAACAGGTGCATCCTTGAAATTAACT
TTATTAAATCCAAAAGGAAGAATATGGGCAATGGTTGCCGGAGGTGGTGCCTCTGTTATC
TATGCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGGTGAATAT
TCCGGTGATCCAAATGAAGAGGATACTCATAAATATGCATGCACTTTAATTTCATTGGCA
ACCAGAAATCCTGATTCTAGACCAAGAGCATTATTAATTGGTGGTGGTATTGCTAATTTT
ACTGATGTGGCTGCCACTTTCAAAGGTATCATTAGAGCAATTAAAGAGTATCATGATGAT
ATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGAGGTGGTCCAAATTATCAATCGGGT
TTACAACATATGAGAGAAATTGGTCATAAATTACATATCCCAATCAAAGTTTTCGGTCCT
GAAGTTAATATGACAAGTATTGTTGCAATGGCAATCCAACATATTAATGTACCTATTGTT
AATCCTTTAAAACCACAAACAAATAATTTTTCACCAACTTTAAATNGTGTTCATTAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---DARGEVDECASFKCGGRWLVDGEPVQFPQPFGRSLYPEETYVNEIDEKTGASLKLTL
LNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKYACTLISLAT
RNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRRGGPNYQSGL
QHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSPTLNXVH*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---rckr*s**mcii*mwwslvs*wrtssisttiw*kfisrgnlck*n**knrcileinf
ikskrknmgngcrrwclcylc*hcc*frfw**awklw*ifr*sk*rgys*icmhfnfign
qks*f*tksiinwwwyc*fy*cgchfqryh*sn*rvs**yh*iksfhfr*krwsklsigf
ttyernws*itypnqsfrs*s*ydkyccngnpty*ctyc*sfkttnk*fftnfkxcslk


Frame B:
---DARGEVDECASFKCGGRWLVDGEPVQFPQPFGRSLYPEETYVNEIDEKTGASLKLTL
LNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKYACTLISLAT
RNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRRGGPNYQSGL
QHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSPTLNXVH*k


Frame C:
---mqevklmnvhhlnvvvvg*lmanqfnfhnhlvevyiqrkpm*mklmkkqvhp*n*ly
*iqkeeygqwlpevvpllsmltllli*vlvmsleimvnipviqmkrilinmhal*fhwqp
eilildqehy*lvvvllillmwlplskvsleqlksimmislnqifpfsleevvqiinrvy
ni*eklvinyisqskfsvlkli*qvllqwqsnilmylllil*nhkqiifhql*xvfik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF648 (VFF648Q) /CSM/VF/VFF6-B/VFF648Q.Seq.d/                       1402   0.0
VFF576 (VFF576Q) /CSM/VF/VFF5-D/VFF576Q.Seq.d/                       1402   0.0
CFF880 (CFF880Q) /CSM/CF/CFF8-D/CFF880Q.Seq.d/                       1402   0.0
AFM446 (AFM446Q) /CSM/AF/AFM4-B/AFM446Q.Seq.d/                       1372   0.0
VFF631 (VFF631Q) /CSM/VF/VFF6-B/VFF631Q.Seq.d/                       1344   0.0
AFA176 (AFA176Q) /CSM/AF/AFA1-D/AFA176Q.Seq.d/                       1324   0.0
SFF560 (SFF560Q) /CSM/SF/SFF5-C/SFF560Q.Seq.d/                       1249   0.0
CFI528 (CFI528Q) /CSM/CF/CFI5-B/CFI528Q.Seq.d/                       1211   0.0
VSB813 (VSB813Q) /CSM/VS/VSB8-A/VSB813Q.Seq.d/                       1197   0.0
SSC786 (SSC786Q) /CSM/SS/SSC7-D/SSC786Q.Seq.d/                       1112   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM108865|BM108865.1 EST556401 potato roots Solanum tuberosum cDNA clone cPRO2F7 5' end,mRNA sequence.    52   9e-14  4
BQ512190|BQ512190.1 EST619605 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 5' end, mRNA sequence.    52   1e-13  4
CA932300|CA932300.1 MTU5CS.P11.B11 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.    60   2e-12  3
BQ512191|BQ512191.1 EST619606 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 3' end, mRNA sequence.    52   3e-11  3
BJ569621|BJ569621.1 Ipomoea nil cDNA clone:jm6c08, 3' end, single read.    54   1e-10  3
BJ569236|BJ569236.1 Ipomoea nil cDNA clone:jm5a06, 3' end, single read.    54   1e-10  3
BE451022|BE451022.1 EST401909 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY16M5, mRNA sequence.    44   3e-09  3
AW156815|AW156815.1 se31b11.y1 Gm-c1015 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1015-2806 5' similar to TR:O80526 O80526 F19J9.9 PROTEIN. ;, mRNA sequence.    62   8e-09  2
CB970649|CB970649.1 CAB10004_IIIa_Fa_G05 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10004_IIIa_Fa_G05 5', mRNA sequence.    54   2e-08  3
CB092483|CB092483.1 hf06d10.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone hf06d10, mRNA sequence.    34   2e-08  4
dna update 2004. 3. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB036847_1(AB036847|pid:none) Ciona intestinalis Ci-ACL mRNA for...   266   6e-70
AK062236_1(AK062236|pid:none) Oryza sativa Japonica Group cDNA c...   258   1e-67
BT070808_1(BT070808|pid:none) Picea sitchensis clone WS02750_O19...   258   1e-67
BT041953_1(BT041953|pid:none) Zea mays full-length cDNA clone ZM...   258   1e-67
AJ344108_1(AJ344108|pid:none) Lupinus albus mRNA for ATP citrate...   258   2e-67
AM468006_2(AM468006|pid:none) Vitis vinifera contig VV78X180138....   257   3e-67
AC003970_9(AC003970|pid:none) Arabidopsis thaliana chromosome I ...   256   6e-67
(Q91V92) RecName: Full=ATP-citrate synthase;          EC=2.3.3.8...   255   1e-66
AK162364_1(AK162364|pid:none) Mus musculus adult male epididymis...   255   1e-66
EU962919_1(EU962919|pid:none) Zea mays clone 246539 ATP-citrate ...   254   1e-66
protein update 2009. 5.14
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFF880 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFF880Z
3' end seq. 
>CFF880Z.Seq
----------TAGATGCAAGAGGTGAAGTTGATGAATGTGCATCATTTAAATGTGGTGGT
CGTTGGTTAGTTGATGGCGAACCAGTTCAATTTCCACAACCATTTGGTAGAAGTTTATAT
CCAGAGGAAACCTATGTAAATGAAATTGATGAAAAAACAGGTGCATCCTTGAAATTAACT
TTATTAAATCCAAAAGGAAGAATATGGGCAATGGTTGCCGGAGGTGGTGCCTCTGTTATC
TATGCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGGTGAATAT
TCCGGTGATCCAAATGAAGAGGATACTCATAAATATGCATGCACTTTAATTTCATTGGCA
ACCAGAAATCCTGATTCTAGACCAAGAGCATTATTAATTGGTGGTGGTATTGCTAATTTT
ACTGATGTGGCTGCCACTTTCAAAGGTATCATTAGAGCAATTAAAGAGTATCATGATGAT
ATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGAGGTGGTCCAAATTATCAATCGGGT
TTACAACATATGAGAGAAATTGGTCATAAATTACATATCCCAATCAAAGTTTTCGGTCCT
GAAGTTAATATGACAAGTATTGTTGCAATGGCAATCCAACATATTAATGTACCTATTGTT
AATCCTTTAAAACCACAAACAAATAATTTTTCACCAACTTTAAATNGTGTTCATTAAAAA
Length of 3' end seq. 710
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -