>CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/
GACGATGCTTTTTAGAGAAAAAAATGGAAGAATTAAATTTAAGAGAAGAACAAAAATCAG
TAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAGTATATTAAATCAAGAAGAATCAGAC
TCACTGGTCACTCTTTTGAATCAATCAGAATCATTGGTAGAGGTGCTTTTGGTGAGGTCA
GATTGGTAAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAAAAGTTGGATAAATTCA
AAAATGATTGAAAAGCATCAAACAATACATGTAAGAAGTGAACGTGATATTTTAGCTGAT
AGTAATAATATTCATGGAAGTAATCCATGGATTGTTAGTTTATATTATTCATTCCAAGAT
GCAAACTTTTTATATTTAATTATGGAATATGTCCCAGGTGGTGATATGATGACACAATTA
ATTAAATATGATACATTTACAGAAGATGCAACTAGATTTTATATAGCAGAAACTGTTTTA
GCACTTCATTCAATTCATAAACTTAGTTATATTCATAGAGATATTAAACCTGATAATCTT
TTGATCGATCAAAAAGGACATATAAAXXXXXXXXXXGTAGATCAGCTAGATTTTGATTCA
TGNAAAAGACAGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCAGACTATACTGCA
CCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTT
ATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCAATTAGAGAAACC
TATCATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAAGAAGCAAAAGCA
GAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTCACCGATCCAATG
ACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTC
GATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTCTCTTCACCAACC
GATACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCAATGCAACCAGTT
CAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCCCTTTCATTGGTTACACTTAT
CGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGT
AGTATAAATAGTAGAGAAGCTTTTGGTAGTATAAATAATAGAGATTCTTTACAAGGTGCA
AATAT

ddaf*rkkwkn*i*eknknq*reenwikkkqsilnqeesdslvtllnqseslvevllvrs
dw*r*kritnfsq*KSWINSKMIEKHQTIHVRSERDILADSNNIHGSNPWIVSLYYSFQD
ANFLYLIMEYVPGGDMMTQLIKYDTFTEDATRFYIAETVLALHSIHKLSYIHRDIKPDNL
LIDQKGHI---

---VDQLDFDSXKRQRRVLAYSNVGTPDYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGY
PPFCSESIRETYHKIMNWKQTLPKIMEEAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVE
EIQSHPFFKGVDWRRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKIT
SFDIPFIGYTYRNFDAMRDAFGSVNSRDAFGSINSREAFGSINNRDSLQGAN

Frame A:
ddaf*rkkwkn*i*eknknq*reenwikkkqsilnqeesdslvtllnqseslvevllvrs
dw*r*kritnfsq*KSWINSKMIEKHQTIHVRSERDILADSNNIHGSNPWIVSLYYSFQD
ANFLYLIMEYVPGGDMMTQLIKYDTFTEDATRFYIAETVLALHSIHKLSYIHRDIKPDNL
LIDQKGHI---

---VDQLDFDSXKRQRRVLAYSNVGTPDYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGY
PPFCSESIRETYHKIMNWKQTLPKIMEEAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVE
EIQSHPFFKGVDWRRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKIT
SFDIPFIGYTYRNFDAMRDAFGSVNSRDAFGSINSREAFGSINNRDSLQGAN

Frame B:
tmlfrekngrikfkrrtkiskekrig*krnrvy*ikknqthwslf*inqnhw*rcfw*gq
igkdeke*qifrnekvg*iqk*lksikqym*evnvif*liviifmevihgllvyiihskm
qtfyi*lwnmsqvvi**hn*lnmihlqkmqldfi*qklf*hfiqfinlvifieilnliif
*sikkdi*---

---*is*ilihxkdreey*hiqtlehqtilhqky**kmvtvqsviggvlvllclkcwlvi
hhfvqnqlekpiirl*ignkhyqkswkkqkqk*t*vqkhkislnvsspiq*lvlvlmvsr
rfnlihslkvsiged*gkpdlqsfhnslhqpilqilitmkrnnnlnqcnqfnqnqeersl
lsislslvtlivilmp*emplvv*tvemplvv*ivekllvv*iieilykvqi

Frame C:
rcflekkmeelnlreeqksvkrreldkketeyiksrrirltghsfesiriigrgafgevr
lvkmkknnkffamkkldkfknd*kasnntckk*t*yfs****yswk*smdc*filfiprc
klfifnygicprw*yddtin*i*yiyrrcn*ilysrncfstsfns*t*lys*ry*t**sf
drskrtyk---

---rsarf*fmxkteksisifkrwntrlyctrsiderwlqcrv*lvecwcyyv*nvgwls
tilfrin*rnls*dyeletnitknhgrsksrsklksrstrsh*tfphrsndsywf*wcrg
dsissil*rcrlektkgnqtsnhsttlftnryfkf*sl*rgttt*tnatssikikkkdhf
frypfhwlhls*f*cherclw*ckq*rclw*yk**rsfw*yk**rfftrcky

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/                       2401   0.0
CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/                       1330   0.0
SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/                       1257   0.0
SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/                       1233   0.0
VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/                       1205   0.0
CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/                       1181   0.0
SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/                       1150   0.0
SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/                       1112   0.0
CFA456 (CFA456Q) /CSM/CF/CFA4-C/CFA456Q.Seq.d/                       1076   0.0
VFO434 (VFO434Q) /CSM/VF/VFO4-B/VFO434Q.Seq.d/                       1045   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX322632|BX322632.5 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-52G20.    74   2e-33  8
E24614|E24614.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74   3e-30  5
E24613|E24613.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74   3e-29  5
AR407839|AR407839.1 Sequence 3 from patent US 6630613.             74   2e-28  5
AR310712|AR310712.1 Sequence 3 from patent US 6559285.             74   2e-28  5
AR201455|AR201455.1 Sequence 3 from patent US 6359193.             74   2e-28  5
AF164041|AF164041.1 Homo sapiens WARTS protein kinase (WARTS) mRNA, complete cds.    74   2e-28  5
AF104413|AF104413.1 Homo sapiens large tumor suppressor 1 (LATS1) mRNA, complete cds.    74   2e-28  5
AR266953|AR266953.1 Sequence 1 from patent US 6495353.             74   2e-27  5
AL583963|AL583963.11 Human DNA sequence from clone RP1-203A15 on chromosome 6.    74   5e-23  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   323   9e-95
AY335703_1(AY335703|pid:none) Synthetic construct Homo sapiens s...   303   2e-93
BC151309_1(BC151309|pid:none) Bos taurus serine/threonine kinase...   303   2e-93
AK312559_1(AK312559|pid:none) Homo sapiens cDNA, FLJ92932, highl...   298   1e-92
(Q15208) RecName: Full=Serine/threonine-protein kinase 38;      ...   298   1e-92
BC160812_1(BC160812|pid:none) Rattus norvegicus serine/threonine...   300   2e-92
AK052288_1(AK052288|pid:none) Mus musculus 13 days embryo heart ...   299   3e-92
BC044485_1(BC044485|pid:none) Danio rerio zgc:55777, mRNA (cDNA ...   299   3e-92
(Q6TGC6) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   311   5e-92
CR860478_1(CR860478|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1...   296   5e-92

 psg: 0.60  gvh: 0.38  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFF849 is nuc

>CFF849F.Seq
GACGATGCTTTTTAGAGAAAAAAATGGAAGAATTAAATTTAAGAGAAGAACAAAAATCAG
TAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAGTATATTAAATCAAGAAGAATCAGAC
TCACTGGTCACTCTTTTGAATCAATCAGAATCATTGGTAGAGGTGCTTTTGGTGAGGTCA
GATTGGTAAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAAAAGTTGGATAAATTCA
AAAATGATTGAAAAGCATCAAACAATACATGTAAGAAGTGAACGTGATATTTTAGCTGAT
AGTAATAATATTCATGGAAGTAATCCATGGATTGTTAGTTTATATTATTCATTCCAAGAT
GCAAACTTTTTATATTTAATTATGGAATATGTCCCAGGTGGTGATATGATGACACAATTA
ATTAAATATGATACATTTACAGAAGATGCAACTAGATTTTATATAGCAGAAACTGTTTTA
GCACTTCATTCAATTCATAAACTTAGTTATATTCATAGAGATATTAAACCTGATAATCTT
TTGATCGATCAAAAAGGACATATAAA----------

>CFF849Z.Seq
----------GTAGATCAGCTAGATTTTGATTCATGNAAAAGACAGAGAAGAGTATTAGC
ATATTCAAACGTTGGAACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTA
CAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTA
TCCACCATTTTGTTCAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAACA
AACATTACCAAAAATCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACA
AGATCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGA
GGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAG
ACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGA
AGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCAC
TTCTTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGC
CTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTTGG
TAGTATAAATAATAGAGATTCTTTACAAGGTGCAAATAT

>CFF849P.Seq
GACGATGCTTTTTAGAGAAAAAAATGGAAGAATTAAATTTAAGAGAAGAACAAAAATCAG
TAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAGTATATTAAATCAAGAAGAATCAGAC
TCACTGGTCACTCTTTTGAATCAATCAGAATCATTGGTAGAGGTGCTTTTGGTGAGGTCA
GATTGGTAAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAAAAGTTGGATAAATTCA
AAAATGATTGAAAAGCATCAAACAATACATGTAAGAAGTGAACGTGATATTTTAGCTGAT
AGTAATAATATTCATGGAAGTAATCCATGGATTGTTAGTTTATATTATTCATTCCAAGAT
GCAAACTTTTTATATTTAATTATGGAATATGTCCCAGGTGGTGATATGATGACACAATTA
ATTAAATATGATACATTTACAGAAGATGCAACTAGATTTTATATAGCAGAAACTGTTTTA
GCACTTCATTCAATTCATAAACTTAGTTATATTCATAGAGATATTAAACCTGATAATCTT
TTGATCGATCAAAAAGGACATATAAA----------GTAGATCAGCTAGATTTTGATTCA
TGNAAAAGACAGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCAGACTATACTGCA
CCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTT
ATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCAATTAGAGAAACC
TATCATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAAGAAGCAAAAGCA
GAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTCACCGATCCAATG
ACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTC
GATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTCTCTTCACCAACC
GATACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCAATGCAACCAGTT
CAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCCCTTTCATTGGTTACACTTAT
CGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGT
AGTATAAATAGTAGAGAAGCTTTTGGTAGTATAAATAATAGAGATTCTTTACAAGGTGCA
AATAT