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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF825
Library CF
(Link to library)
Clone ID CFF825
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFF825P
(Link to Original site)
Representative DNA sequence 
>CFF825 (CFF825Q) /CSM/CF/CFF8-B/CFF825Q.Seq.d/
ATTAAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAA
TGGCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTT
CTTTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCA
CTACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCAC
TTGAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACG
GTAATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATA
GAATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGC
GTTTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTC
TCCTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAG
TATGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTAT
AATATGGATATCAATGCTCCATCTTTTAATATTGAAAAAGXXXXXXXXXXGCTCAACAAG
GTTATCAAGCATGGAAANAAGGNGTCAATNANATTGGTNATGANATCGCCAANACTGCNC
ATNATGTAGGTNATGGTTTNGCCAANACTGCNCGTTAAGTAGGTNATGGAATTANAATCC
CTGCAAAGGAGGGATATNAACTCNTTAAANATGGAGCTNAAAAAACTTGGGTNAANAAAN
ATTNAAGGTTATCCTTNATTNAAATTNAAAAAGCCCNACAAANAATGGCTGAACAANAAN
AAAAAANAAGGTTTANGCAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ikliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicip
lliifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfei
ellitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQ
YDTAYPDENGLGWDILASFYNMDINAPSFNIEK---

---AQQGYQAWKXGVNXIGXXIAXTAHXVGXGXAXTAR*vgxgixipakegyxlxkxgax
ktwvxkxxrlsxixixkaxqxmaeqxxkxrfxq
Translated Amino Acid sequence (All Frames) 
Frame A:
ikliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicip
lliifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfei
ellitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQ
YDTAYPDENGLGWDILASFYNMDINAPSFNIEK---

---AQQGYQAWKXGVNXIGXXIAXTAHXVGXGXAXTAR*vgxgixipakegyxlxkxgax
ktwvxkxxrlsxixixkaxqxmaeqxxkxrfxq

Frame B:
ln*lfflsslyti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fash
ys*flgm**ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*
nc*sq*tkpc***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihs
milliqmkmvwdgislhlfiiwismlhllilkk---

---lnkvikhgxkxsxxlvmxspxlxxm*vmvxpxlxvk*vmelxslqrrdxnslxmelk
klgxxxixgypxxkxkkpxkxwlnxxkkxglx

Frame C:
*inyffylhyiqfnfinflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhpt
thnfwacnsvinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdr
iadhsrrnhvdndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv
*yclsr*kwfgmgypcifl*ygyqcsif*y*k---

---strlssmexrxqxxwx*xrqxcxxcrxwfxqxcxlsrxwnxnpckggixtx*xwsxk
nlgxxxxkvilxxnxksptxng*txxkxkvxa
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF825 (CFF825Q) /CSM/CF/CFF8-B/CFF825Q.Seq.d/                       1505   0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/                       1227   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                       1227   0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/                       1227   0.0
SFG737 (SFG737Q) /CSM/SF/SFG7-B/SFG737Q.Seq.d/                       1227   0.0
SFD458 (SFD458Q) /CSM/SF/SFD4-C/SFD458Q.Seq.d/                       1227   0.0
CFG396 (CFG396Q) /CSM/CF/CFG3-D/CFG396Q.Seq.d/                       1227   0.0
CFG160 (CFG160Q) /CSM/CF/CFG1-C/CFG160Q.Seq.d/                       1227   0.0
CFF834 (CFF834Q) /CSM/CF/CFF8-B/CFF834Q.Seq.d/                       1227   0.0
AFO704 (AFO704Q) /CSM/AF/AFO7-A/AFO704Q.Seq.d/                       1227   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   4e-05  12
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    34   7e-04  12
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    40   0.002  10
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32   0.004  11
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   0.009  12
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   0.009  13
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    34   0.020  11
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P4.    38   0.022  11
AC137995|AC137995.15 Medicago truncatula clone mth2-11j1, WORKING DRAFT SEQUENCE, 5 unordered pieces.    34   0.041  10
BH689643|BH689643.1 BOMDR69TF BO_2_3_KB Brassica oleracea genomic clone BOMDR69, DNA sequence.    50   0.057  1
dna update 2004. 3. 6
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 1,301,952,761
protein update 2009. 5.14
PSORT 

 psg: 0.73  gvh: 0.40  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFF825 is cyt
5' end seq. ID CFF825F
5' end seq. 
>CFF825F.Seq
ATTAAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAA
TGGCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTT
CTTTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCA
CTACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCAC
TTGAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACG
GTAATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATA
GAATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGC
GTTTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTC
TCCTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAG
TATGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTAT
AATATGGATATCAATGCTCCATCTTTTAATATTGAAAAAG----------
Length of 5' end seq. 640
3' end seq. ID CFF825Z
3' end seq. 
>CFF825Z.Seq
----------GCTCAACAAGGTTATCAAGCATGGAAANAAGGNGTCAATNANATTGGTNA
TGANATCGCCAANACTGCNCATNATGTAGGTNATGGTTTNGCCAANACTGCNCGTTAAGT
AGGTNATGGAATTANAATCCCTGCAAAGGAGGGATATNAACTCNTTAAANATGGAGCTNA
AAAAACTTGGGTNAANAAANATTNAAGGTTATCCTTNATTNAAATTNAAAAAGCCCNACA
AANAATGGCTGAACAANAANAAAAAANAAGGTTTANGCAA
Length of 3' end seq. 270
Connected seq. ID CFF825P
Connected seq. 
>CFF825P.Seq
ATTAAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAA
TGGCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTT
CTTTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCA
CTACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCAC
TTGAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACG
GTAATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATA
GAATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGC
GTTTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTC
TCCTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAG
TATGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTAT
AATATGGATATCAATGCTCCATCTTTTAATATTGAAAAAG----------GCTCAACAAG
GTTATCAAGCATGGAAANAAGGNGTCAATNANATTGGTNATGANATCGCCAANACTGCNC
ATNATGTAGGTNATGGTTTNGCCAANACTGCNCGTTAAGTAGGTNATGGAATTANAATCC
CTGCAAAGGAGGGATATNAACTCNTTAAANATGGAGCTNAAAAAACTTGGGTNAANAAAN
ATTNAAGGTTATCCTTNATTNAAATTNAAAAAGCCCNACAAANAATGGCTGAACAANAAN
AAAAAANAAGGTTTANGCAA
Length of connected seq. 910
Full length Seq ID -
Full length Seq. -
Length of full length seq. -