>CFF779 (CFF779Q) /CSM/CF/CFF7-D/CFF779Q.Seq.d/
GTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAAT
CAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXX
XTCCACCAGTTTGTAGAACTAGATGTCCANAAGGTCATGAATGTAAAGTTGATGAATGGG
GTAAAGAATGTTGCGTAAAGATCCAAATGTGATGATATTTGTGACTTGCGTTGTCCAAAG
GGTCATGAATGCAAGATCAAACATGATGGTAGTAAATGCTGTGTCCGTTCATGGAGACCA
AGACCACATAAACCACATCCACGTCCACCAATCTGCAGATTAAGATGTCCACCAGGTCAT
GAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTTAAAAAACGTCATCATGATAGA
TGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGT
TGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCCAAGAGATGA
AAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAAGATCCCTTGATTGGGC
TGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGA
TGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGA
TGACAATTATTATGGTGATGATCACTATGATAATGATNGGGACAATGATNATGATTGGGG
TAATGATTGGGATAATGATTGGGACAATGAAGATGCGTGATACTTGGAATGATGANGACT
TCCAAGATGCAAATAGAAGGGACTATTAAGCCATTATTTTTTAAAAA

vhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---PPVCRTRCPXGHECKVDEWGKECCVKIQM**yl*lalskgs*mqdqt*w**mlcpfm
etktt*ttststnlqikmstrs*mqt**tw*rmlr*ktss**m*pqm*erl*m*nqt*wl
qmlcqensketml*tkfmcqemknvlppktesfv*nqdpliglkmkmmivtmmivtmmmm
nmmvimmavtvtmmvimmvimmmtiimvmitmimxgtmxmigvmigimigtmkmrdtwnd
xdfqdanrrdy*aiif*k

Frame A:
vhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---stsl*n*msxrs*m*s**mg*rmlrkdpnvmifvtcvvqrvmnarsnmmvvnavsvh
gdqdhinhihvhqsad*dvhqvmnanmmnmvknvalknvimidvtsnvrevmnvksnmma
pnvvsrelqrdhvvnqihvprdekcvatkdriicvkprsldwaenenddrdyddrdyddd
eydgdydgrdgdydgdydgdydddnyygddhydndxdndxdwgndwdndwdneda*yle*
*xlprck*kgllshyflk

Frame B:
fifklnintikks*n*ickinl*qklvi*kkknqkk---

---PPVCRTRCPXGHECKVDEWGKECCVKIQM**yl*lalskgs*mqdqt*w**mlcpfm
etktt*ttststnlqikmstrs*mqt**tw*rmlr*ktss**m*pqm*erl*m*nqt*wl
qmlcqensketml*tkfmcqemknvlppktesfv*nqdpliglkmkmmivtmmivtmmmm
nmmvimmavtvtmmvimmvimmmtiimvmitmimxgtmxmigvmigimigtmkmrdtwnd
xdfqdanrrdy*aiif*k

Frame C:
sysn*isiqlkkvkikfvksicnkn**fkkkktkkk---

---hqfveldvxkvmnvklmngvknva*rskcddicdlrcpkgheckikhdgskccvrsw
rprphkphprppicrlrcppgheckhdehgkeccvkkrhhdrcdlkckrgyeckikhdgs
kccvkrtpkrpcckpnscakr*kmcchqrqnhlcktkip*lg*k*k**s*l**s*l****
i*w*l*wp*r*l*w*l*w*l***qllw**sl***xgq*x*lg**lg**lgq*rcvilgmm
xtskmqiegtikplffk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF779 (CFF779Q) /CSM/CF/CFF7-D/CFF779Q.Seq.d/                        944   0.0
SFH303 (SFH303Q) /CSM/SF/SFH3-A/SFH303Q.Seq.d/                        884   0.0
SLE802 (SLE802Q) /CSM/SL/SLE8-A/SLE802Q.Seq.d/                        880   0.0
CHD840 (CHD840Q) /CSM/CH/CHD8-B/CHD840Q.Seq.d/                        880   0.0
CHB216 (CHB216Q) /CSM/CH/CHB2-A/CHB216Q.Seq.d/                        880   0.0
CFK155 (CFK155Q) /CSM/CF/CFK1-C/CFK155Q.Seq.d/                        880   0.0
CFE821 (CFE821Q) /CSM/CF/CFE8-A/CFE821Q.Seq.d/                        880   0.0
CFA415 (CFA415Q) /CSM/CF/CFA4-A/CFA415Q.Seq.d/                        880   0.0
CFA167 (CFA167Q) /CSM/CF/CFA1-C/CFA167Q.Seq.d/                        880   0.0
SLA444 (SLA444Q) /CSM/SL/SLA4-B/SLA444Q.Seq.d/                        874   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   652   0.0    9
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   652   0.0    8
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.   268   e-131  4
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.    66   2e-17  5
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.    66   1e-16  6
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    62   1e-05  1
AL359197|AL359197.20 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-498I18.    34   0.27   6
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING.    46   0.86   1
AC135542|AC135542.2 Pan troglodytes clone CH251-181F12, WORKING DRAFT SEQUENCE, 11 ordered pieces.    32   1.6    2
AL948786|AL948786.1 Arabidopsis thaliana T-DNA flanking sequence GK-315D03-015824.    44   3.4    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   212   3e-67
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   111   2e-30
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    91   2e-17
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    42   0.020
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    42   0.020
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    41   0.045
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    41   0.059
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    38   0.50
EU420056_1(EU420056|pid:none) Tetrahymena pigmentosa strain HG2 ...    36   1.5
X89960_1(X89960|pid:none) H.sapiens mRNA for mitochondrial capsu...    35   4.2

 psg: 0.20  gvh: 0.18  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.05
 nuc: 0.38  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CFF779 is nuc

>CFF779F.Seq
GTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAAT
CAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAA---------
-

>CFF779Z.Seq
----------TCCACCAGTTTGTAGAACTAGATGTCCANAAGGTCATGAATGTAAAGTTG
ATGAATGGGGTAAAGAATGTTGCGTAAAGATCCAAATGTGATGATATTTGTGACTTGCGT
TGTCCAAAGGGTCATGAATGCAAGATCAAACATGATGGTAGTAAATGCTGTGTCCGTTCA
TGGAGACCAAGACCACATAAACCACATCCACGTCCACCAATCTGCAGATTAAGATGTCCA
CCAGGTCATGAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTTAAAAAACGTCAT
CATGATAGATGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATGGC
TCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCC
AAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAAGATCCCT
TGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGA
TGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGA
TTATGATGATGACAATTATTATGGTGATGATCACTATGATAATGATNGGGACAATGATNA
TGATTGGGGTAATGATTGGGATAATGATTGGGACAATGAAGATGCGTGATACTTGGAATG
ATGANGACTTCCAAGATGCAAATAGAAGGGACTATTAAGCCATTATTTTTTAAAAA

>CFF779P.Seq
GTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAAT
CAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAAAA---------
-TCCACCAGTTTGTAGAACTAGATGTCCANAAGGTCATGAATGTAAAGTTGATGAATGGG
GTAAAGAATGTTGCGTAAAGATCCAAATGTGATGATATTTGTGACTTGCGTTGTCCAAAG
GGTCATGAATGCAAGATCAAACATGATGGTAGTAAATGCTGTGTCCGTTCATGGAGACCA
AGACCACATAAACCACATCCACGTCCACCAATCTGCAGATTAAGATGTCCACCAGGTCAT
GAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTTAAAAAACGTCATCATGATAGA
TGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGT
TGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCCAAGAGATGA
AAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAAGATCCCTTGATTGGGC
TGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGA
TGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGA
TGACAATTATTATGGTGATGATCACTATGATAATGATNGGGACAATGATNATGATTGGGG
TAATGATTGGGATAATGATTGGGACAATGAAGATGCGTGATACTTGGAATGATGANGACT
TCCAAGATGCAAATAGAAGGGACTATTAAGCCATTATTTTTTAAAAA