AFE624
Library AF
(Link to library)
Clone ID AFE624
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08726-1
Original site URL
Representative seq. ID AFE624P
(Link to Original site)
Representative DNA sequence
>AFE624 (AFE624Q) /CSM/AF/AFE6-A/AFE624Q.Seq.d/
AAAAAATAAAATTAACTACAAAACCAAAAACAATAACAAACCAAAACAACAACAACAACT
TGAAACACATCACAAATTAAAAAATGGATACTGCAGTTGCAAATGATAGTGGTTATGAAA
TATCATGGATATCAGATAACTACTTAAAATTTATTATTAAAAAGAGTCCTGTTAAAAAAA
CAACAACAACAACAACCACAACCACAACATCATCCTCTTCACCATCTTCGTCTACAACTA
CAACACCAACAAAATCAACATCACCACCTAAAAACAAAAGAGAAAGATTACAACTTGATA
ATGTTGATGAAGACGATAGTAATTATAAATTACCAAGTCTTGATGAATTTAAAACAACAA
ACACCAACAATGAAAATAGTAACAAAAATACAGTCATGGACTCAAATAATAATAACAATA
GTAATGAAAATATTGATACATTATTAAATGTACCAGAATTAACACTTAAAGATTTTAATA
ATAAAAAACAAAAAAAACANCAAAAACATCAAAAACATAAAAAACAACAAAAACATCCAA
AAGATGTAGTTTTCAAAGATTTGGAAGATTCCAATATTTTAAATGATAATCCTAACAATA
TAGAGAAACAAXXXXXXXXXXAGCATTGCTTGAAAAAGGTAAAATTACTGGTGATTGGGG
TACAACCGCAACATTGGCAATAATTAAGGATAACCATATTCGTGTTGGTTGGGTAGGTGA
TTCAATGGCAGTTTTATTTAAACAATNTGCAAATGGTAAAGATTATACTCCAATTCAACT
ATCAAATGATCATAAACCTGAAAATCCNCTCGAAAAAAAAAGAATAATTACAACTGGTGG
TANAGTAGTTTTTANATGTGGATGTTATAGAGTTATACCAAATAAAAATGATTATAGTAA
TGATGACATTATGAAACAAAGATTAGCATTAAATATGAGTAGAGCATTAGGTCATGTAGT
TTTAAGTAAATATGGAGTTAGTAGTACACCAGAATTTCAAAGTGAATCATTGAACCCCGG
TGATTATGTCATTGTCGCTTCTGATGGTCTTTGGAATGTTTTGGATTTCAAAGCATGCTG
CAAGTATATTAAGAAATCAACTTCTGTAAAAGAATTAACAGATTTATTGTTAAGCGTTGT
TGAAAGTAAGTGCCAAAGTTTTAAAATACCATGCGATAATGTGACAATTTGTTGTTACAA
GCNCTCCTAAAAAANGATTACNCCCAAAATAGAACATTGTTGGGNGGTAAAAAAAAAAAT
TTTAATAAAATGTTTT
sequence update 2001. 6. 2
Translated Amino Acid sequence
kiklttkpktitnqnnnnnlkhitn*KMDTAVANDSGYEISWISDNYLKFIIKKSPVKKT
TTTTTTTTTSSSSPSSSTTTTPTKSTSPPKNKRERLQLDNVDEDDSNYKLPSLDEFKTTN
TNNENSNKNTVMDSNNNNNSNENIDTLLNVPELTLKDFNNKKQKKXQKHQKHKKQQKHPK
DVVFKDLEDSNILNDNPNNIEKQ---

---ALLEKGKITGDWGTTATLAIIKDNHIRVGWVGDSMAVLFKQXANGKDYTPIQLSNDH
KPENPLEKKRIITTGGXVVFXCGCYRVIPNKNDYSNDDIMKQRLALNMSRALGHVVLSKY
GVSSTPEFQSESLNPGDYVIVASDGLWNVLDFKACCKYIKKSTSVKELTDLLLSVVESKC
QSFKIPCDNVTICCYKXS*kxitpkiehcwxvkkkilikcf


Translated Amino Acid sequence (All Frames)
Frame A:
kk*n*lqnqkq*qtkttttt*ntsqikkwilqlqmivvmkyhgyqitt*nlllkrvllkk
qqqqqpqpqhhplhhlrlqlqhqqnqhhhlktkekdynlimlmktiviinyqvlmnlkqq
tptmkivtkiqswtqiiitivmkilihy*myqn*hlkiliiknkknxknikniknnkniq
km*fskiwkipif*miilti*rn---

---sia*kr*nyw*lgynrnignn*g*pyscwlgr*fngsfi*txckw*rlysnstik*s
*t*ksxrkkknnynwwxssfxmwml*sytk*k*l****hyetkisikye*sirscsfk*i
ws**ytrisk*iiepr*lchcrf*wslecfgfqsmlqvy*einfckrinrfivkrc*k*v
pkf*ntmr*cdnlllqallkxdyxqnrtllggkkknfnkmf

Frame B:
knkinyktknnnkpkqqqqlethhklkngycsck**wl*nimdir*llkiyy*kesc*kn
nnnnnhnhniilftifvynyntnkinitt*kqkrkitt**c**rr**l*itks**i*nnk
hqq*k**qkyshglk***q***ky*yiikctrint*rf***ktkktxktskt*kttktsk
rcsfqrfgrfqyfk**s*qyret---

---ALLEKGKITGDWGTTATLAIIKDNHIRVGWVGDSMAVLFKQXANGKDYTPIQLSNDH
KPENPLEKKRIITTGGXVVFXCGCYRVIPNKNDYSNDDIMKQRLALNMSRALGHVVLSKY
GVSSTPEFQSESLNPGDYVIVASDGLWNVLDFKACCKYIKKSTSVKELTDLLLSVVESKC
QSFKIPCDNVTICCYKXS*kxitpkiehcwxvkkkilikcf

Frame C:
kiklttkpktitnqnnnnnlkhitn*KMDTAVANDSGYEISWISDNYLKFIIKKSPVKKT
TTTTTTTTTSSSSPSSSTTTTPTKSTSPPKNKRERLQLDNVDEDDSNYKLPSLDEFKTTN
TNNENSNKNTVMDSNNNNNSNENIDTLLNVPELTLKDFNNKKQKKXQKHQKHKKQQKHPK
DVVFKDLEDSNILNDNPNNIEKQ---

---hclkkvkllvigvqpqhwq*lritifvlvg*viqwqfylnnxqmvkiilqfnyqmii
nlkixskkke*lqlvvx*flxvdvielyqikmiivmmtl*nkd*h*i*veh*vm*f*vnm
elvvhqnfkvnh*tpvimslsllmvfgmfwiskhaasilrnqll*kn*qiyc*allkvsa
kvlkyhaim*qfvvtsxpkkxlxpk*nivgx*kkkf**nv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFE624 (AFE624Q) /CSM/AF/AFE6-A/AFE624Q.Seq.d/ 1239 0.0
AFL718 (AFL718Q) /CSM/AF/AFL7-A/AFL718Q.Seq.d/ 533 e-150
CHC205 (CHC205Q) /CSM/CH/CHC2-A/CHC205Q.Seq.d/ 48 3e-04
VHL122 (VHL122Q) /CSM/VH/VHL1-A/VHL122Q.Seq.d/ 46 0.001
SSJ756 (SSJ756Q) /CSM/SS/SSJ7-C/SSJ756Q.Seq.d/ 46 0.001
SSH502 (SSH502Q) /CSM/SS/SSH5-A/SSH502Q.Seq.d/ 46 0.001
SSC454 (SSC454Q) /CSM/SS/SSC4-C/SSC454Q.Seq.d/ 46 0.001
SLK303 (SLK303Q) /CSM/SL/SLK3-A/SLK303Q.Seq.d/ 46 0.001
SLA372 (SLA372Q) /CSM/SL/SLA3-C/SLA372Q.Seq.d/ 46 0.001
CFJ227 (CFJ227Q) /CSM/CF/CFJ2-B/CFJ227Q.Seq.d/ 46 0.001

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ118395|BQ118395.2 EST603971 mixed potato tissues Solanum tuberosum cDNA clone STMEA57 5' end, mRNA sequence. 56 0.001 1
BE471980|BE471980.1 EST416833 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA31B5, mRNA sequence. 56 0.001 1
BG351740|BG351740.1 131G01 Mature tuber lambda ZAP Solanum tuberosum cDNA, mRNA sequence. 56 0.001 1
BE471697|BE471697.1 EST416550 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA30E19, mRNA sequence. 56 0.001 1
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 38 0.005 6
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 36 0.007 7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 42 0.008 7
AL024506|AL024506.1 Human DNA sequence from clone 133H11 on chromosome 6p24. Contains STSs, GSSs and genomic marker D6S410. 56 0.013 2
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence. 36 0.014 10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 0.018 9
dna update 2003. 8.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FB916529_1(FB916529|pid:none) Sequence 135802 from Patent WO2008... 80 1e-13
AL844507_204(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 78 6e-13
BT054489_1(BT054489|pid:none) Zea mays full-length cDNA clone ZM... 77 2e-12
AL031804_7(AL031804|pid:none) Arabidopsis thaliana DNA chromosom... 76 2e-12
AP008212_1241(AP008212|pid:none) Oryza sativa (japonica cultivar... 75 4e-12
(Q652Z7) RecName: Full=Probable protein phosphatase 2C 55; ... 75 4e-12
BT036081_1(BT036081|pid:none) Zea mays full-length cDNA clone ZM... 75 4e-12
AL928954_1(AL928954|pid:none) Zebrafish DNA sequence from clone ... 75 4e-12
EU966941_1(EU966941|pid:none) Zea mays clone 298286 catalytic/ p... 75 4e-12
AP005593_18(AP005593|pid:none) Oryza sativa Japonica Group genom... 75 6e-12
protein update 2009. 4.19
PSORT

psg: 0.75 gvh: 0.40 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.23 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
36.0 %: cytoplasmic

>> prediction for AFE624 is nuc

5' end seq. ID AFE624F
5' end seq.
>AFE624F.Seq
AAAAAATAAAATTAACTACAAAACCAAAAACAATAACAAACCAAAACAACAACAACAACT
TGAAACACATCACAAATTAAAAAATGGATACTGCAGTTGCAAATGATAGTGGTTATGAAA
TATCATGGATATCAGATAACTACTTAAAATTTATTATTAAAAAGAGTCCTGTTAAAAAAA
CAACAACAACAACAACCACAACCACAACATCATCCTCTTCACCATCTTCGTCTACAACTA
CAACACCAACAAAATCAACATCACCACCTAAAAACAAAAGAGAAAGATTACAACTTGATA
ATGTTGATGAAGACGATAGTAATTATAAATTACCAAGTCTTGATGAATTTAAAACAACAA
ACACCAACAATGAAAATAGTAACAAAAATACAGTCATGGACTCAAATAATAATAACAATA
GTAATGAAAATATTGATACATTATTAAATGTACCAGAATTAACACTTAAAGATTTTAATA
ATAAAAAACAAAAAAAACANCAAAAACATCAAAAACATAAAAAACAACAAAAACATCCAA
AAGATGTAGTTTTCAAAGATTTGGAAGATTCCAATATTTTAAATGATAATCCTAACAATA
TAGAGAAACAA----------
Length of 5' end seq. 611
3' end seq. ID AFE624Z
3' end seq.
>AFE624Z.Seq
----------AGCATTGCTTGAAAAAGGTAAAATTACTGGTGATTGGGGTACAACCGCAA
CATTGGCAATAATTAAGGATAACCATATTCGTGTTGGTTGGGTAGGTGATTCAATGGCAG
TTTTATTTAAACAATNTGCAAATGGTAAAGATTATACTCCAATTCAACTATCAAATGATC
ATAAACCTGAAAATCCNCTCGAAAAAAAAAGAATAATTACAACTGGTGGTANAGTAGTTT
TTANATGTGGATGTTATAGAGTTATACCAAATAAAAATGATTATAGTAATGATGACATTA
TGAAACAAAGATTAGCATTAAATATGAGTAGAGCATTAGGTCATGTAGTTTTAAGTAAAT
ATGGAGTTAGTAGTACACCAGAATTTCAAAGTGAATCATTGAACCCCGGTGATTATGTCA
TTGTCGCTTCTGATGGTCTTTGGAATGTTTTGGATTTCAAAGCATGCTGCAAGTATATTA
AGAAATCAACTTCTGTAAAAGAATTAACAGATTTATTGTTAAGCGTTGTTGAAAGTAAGT
GCCAAAGTTTTAAAATACCATGCGATAATGTGACAATTTGTTGTTACAAGCNCTCCTAAA
AAANGATTACNCCCAAAATAGAACATTGTTGGGNGGTAAAAAAAAAAATTTTAATAAAAT
GTTTT
Length of 3' end seq. 655
Connected seq. ID AFE624P
Connected seq.
>AFE624P.Seq
AAAAAATAAAATTAACTACAAAACCAAAAACAATAACAAACCAAAACAACAACAACAACT
TGAAACACATCACAAATTAAAAAATGGATACTGCAGTTGCAAATGATAGTGGTTATGAAA
TATCATGGATATCAGATAACTACTTAAAATTTATTATTAAAAAGAGTCCTGTTAAAAAAA
CAACAACAACAACAACCACAACCACAACATCATCCTCTTCACCATCTTCGTCTACAACTA
CAACACCAACAAAATCAACATCACCACCTAAAAACAAAAGAGAAAGATTACAACTTGATA
ATGTTGATGAAGACGATAGTAATTATAAATTACCAAGTCTTGATGAATTTAAAACAACAA
ACACCAACAATGAAAATAGTAACAAAAATACAGTCATGGACTCAAATAATAATAACAATA
GTAATGAAAATATTGATACATTATTAAATGTACCAGAATTAACACTTAAAGATTTTAATA
ATAAAAAACAAAAAAAACANCAAAAACATCAAAAACATAAAAAACAACAAAAACATCCAA
AAGATGTAGTTTTCAAAGATTTGGAAGATTCCAATATTTTAAATGATAATCCTAACAATA
TAGAGAAACAA----------AGCATTGCTTGAAAAAGGTAAAATTACTGGTGATTGGGG
TACAACCGCAACATTGGCAATAATTAAGGATAACCATATTCGTGTTGGTTGGGTAGGTGA
TTCAATGGCAGTTTTATTTAAACAATNTGCAAATGGTAAAGATTATACTCCAATTCAACT
ATCAAATGATCATAAACCTGAAAATCCNCTCGAAAAAAAAAGAATAATTACAACTGGTGG
TANAGTAGTTTTTANATGTGGATGTTATAGAGTTATACCAAATAAAAATGATTATAGTAA
TGATGACATTATGAAACAAAGATTAGCATTAAATATGAGTAGAGCATTAGGTCATGTAGT
TTTAAGTAAATATGGAGTTAGTAGTACACCAGAATTTCAAAGTGAATCATTGAACCCCGG
TGATTATGTCATTGTCGCTTCTGATGGTCTTTGGAATGTTTTGGATTTCAAAGCATGCTG
CAAGTATATTAAGAAATCAACTTCTGTAAAAGAATTAACAGATTTATTGTTAAGCGTTGT
TGAAAGTAAGTGCCAAAGTTTTAAAATACCATGCGATAATGTGACAATTTGTTGTTACAA
GCNCTCCTAAAAAANGATTACNCCCAAAATAGAACATTGTTGGGNGGTAAAAAAAAAAAT
TTTAATAAAATGTTTT
Length of connected seq. 1266
Full length Seq ID -
Full length Seq. -
Length of full length seq. -