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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF695
Library CF
(Link to library)
Clone ID CFF695
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09949-1
Original site URL
Representative seq. ID CFF695P
(Link to Original site)
Representative DNA sequence 
>CFF695 (CFF695Q) /CSM/CF/CFF6-D/CFF695Q.Seq.d/
ATATCCTTAAAGATGTTATCAAGAAATTTAAAAACTTTAGTTAAAAATAAAAATATATTA
TATTTTACTACATCAACTAGTAAATCAAATAAAATTTATGAAAATGCAAAGGAAGCAGTT
AAAGATATTCCAAATGGTTCAAAATTATTAGTAGGTGGATTTGGACTTTGTGGTATTCCA
GAGAATTTAATATCAGCAGTACGTGATACAGGTGTAAAGGATTTAACAGTTGTTAGTAAT
AATGCAGGTGTTGATGATTTTGGATTAGGTGTTTTATTAAAGAGTAGACAAATTAAAAGA
ATGATCTCATCATATGTTGGTGAGAATGCAACCTTTGAGAGTCAATATCTCAAGGGTGAG
CTTGAAGTAGAGTTAACACCACAAGGTAATTTAGCAGAGAGATTAAGAGCAGGTGGTGCA
GGTATTCCAGCTTTCTATACAAGTACAGGTGTTGGTACAGTGTTGGTGGAAGAAGGTGGT
TTCCCAATCAAGTATGCAAATGATGGTTCAGGTAAAGTTGAAATTAAGAGCGAACCACGT
CCAACTCAACTTTACAATGGTCGTAAXXXXXXXXXXAGCAGCTGCCAAACCAAAGGATGA
GGCAGCAGCCAAGAGAGAGCGTATCGTACGTCGTGCAGCTTTAGAGTTTGAAGATGGTAT
GTATTGTAATCTTGGTATTGGTATGCCAACATTGGCCAGTAATTTCATTCCAAAGGGTAT
TAGAATCGAATTACAATCAGAGAATGGCTTATTAGGTATGGGTCCATTCCCAAAAATGGG
CGAACATGATGCCGATTTAATCAATGCAGGTAAGGAAACCGTTACAACCATTCCAGGTTC
TTCCATTTTCTCAAGTGCTGATTCATTCGCAATGATTCGTGGTGGTCATGTTGATTTAAC
AATTCTTGGTGGTATGCAAGTTAGTGGTAATGGTGATTTGGCCAATTGGGTCATTCCTGG
CTCAATGGTTAAAGGTCCAGGTGGTGCTATGGATTTAACTTCAAGTGGTTCACGTGTAGT
TGTCATAATGGAACATACCACAAAACATGGAAAACCAAAGATTTTAAAGAATTGTACACT
TCCACTCACTGGTAAATCTTGTGTAAATAGAATCATCACTGAATTGGCAGTTTTCGATGT
CGTCAATGGTAAATTAGAATTAATTGAAGTCGTTGATGGCCAAACAGTTGATGATATTAA
ATCTAAAACTGAAGCAGAATTTACTGTTTCAAAAAATTTAAAACCATTACAACAAGTTGA
AATTTAAAATAATAATAATAATAATAATAAAAATATCAACATTTCCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ISLKMLSRNLKTLVKNKNILYFTTSTSKSNKIYENAKEAVKDIPNGSKLLVGGFGLCGIP
ENLISAVRDTGVKDLTVVSNNAGVDDFGLGVLLKSRQIKRMISSYVGENATFESQYLKGE
LEVELTPQGNLAERLRAGGAGIPAFYTSTGVGTVLVEEGGFPIKYANDGSGKVEIKSEPR
PTQLYNGR---

---AAAKPKDEAAAKRERIVRRAALEFEDGMYCNLGIGMPTLASNFIPKGIRIELQSENG
LLGMGPFPKMGEHDADLINAGKETVTTIPGSSIFSSADSFAMIRGGHVDLTILGGMQVSG
NGDLANWVIPGSMVKGPGGAMDLTSSGSRVVVIMEHTTKHGKPKILKNCTLPLTGKSCVN
RIITELAVFDVVNGKLELIEVVDGQTVDDIKSKTEAEFTVSKNLKPLQQVEI*nnnnnnn
kninis
Translated Amino Acid sequence (All Frames) 
Frame A:
ISLKMLSRNLKTLVKNKNILYFTTSTSKSNKIYENAKEAVKDIPNGSKLLVGGFGLCGIP
ENLISAVRDTGVKDLTVVSNNAGVDDFGLGVLLKSRQIKRMISSYVGENATFESQYLKGE
LEVELTPQGNLAERLRAGGAGIPAFYTSTGVGTVLVEEGGFPIKYANDGSGKVEIKSEPR
PTQLYNGR---

---sscqtkg*gssqerayrtscsfrv*rwyvl*swywyanigq*fhskgy*nritirew
lirygsipkngrt*crfnqcr*gnrynhsrffhflkc*firndswwsc*fnnswwyas*w
*w*fgqlghswlng*rsrwcygfnfkwftcschngtyhktwktkdfkelytsthw*ilck
*nhh*igsfrcrqw*irin*sr*wpns**y*i*n*sriycfkkfktitts*nlk******
*kyqhf

Frame B:
yp*rcyqei*kl*lkikiyyillhqlvnqikfmkmqrkqlkifqmvqny**vdldfvvfq
ri*yqqyviqv*ri*qllvimqvlmild*vfy*rvdklke*shhmlvrmqplrvnisrvs
lk*s*hhkvi*qrd*eqvvqvfqlsiqvqvlvqcwwkkvvsqssmqmmvqvklklranhv
qlnftmvv---

---AAAKPKDEAAAKRERIVRRAALEFEDGMYCNLGIGMPTLASNFIPKGIRIELQSENG
LLGMGPFPKMGEHDADLINAGKETVTTIPGSSIFSSADSFAMIRGGHVDLTILGGMQVSG
NGDLANWVIPGSMVKGPGGAMDLTSSGSRVVVIMEHTTKHGKPKILKNCTLPLTGKSCVN
RIITELAVFDVVNGKLELIEVVDGQTVDDIKSKTEAEFTVSKNLKPLQQVEI*nnnnnnn
kninis

Frame C:
ilkdvikkfknfs*k*kyiifyyin**ik*nl*kckgss*ryskwfkiisrwiwtlwysr
efnisst*yrckgfnsc***crc**fwircfike*tn*kndliicw*ecnl*esisqg*a
*srvnttr*fsreiksrwcryssflykyrcwysvggrrwfpnqvck*wfr*s*n*ertts
nstlqws*---

---qlpnqrmrqqpresvsyvvql*slkmvcivilvlvcqhwpvisfqrvlesnynqrma
y*vwvhsqkwanmmpi*smqvrkplqpfqvlpfsqvlihsq*fvvvmli*qflvvcklvv
mviwpigsflaqwlkvqvvlwi*lqvvhv*ls*wnipqnmenqrf*rivhfhslvnlv*i
esslnwqfsmssmvn*n*lkslmakqlmilnlklkqnllfqki*nhynklkfkiiiiiii
kistfp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF695 (CFF695Q) /CSM/CF/CFF6-D/CFF695Q.Seq.d/                       2446   0.0
VFJ203 (VFJ203Q) /CSM/VF/VFJ2-A/VFJ203Q.Seq.d/                       1364   0.0
AFK785 (AFK785Q) /CSM/AF/AFK7-D/AFK785Q.Seq.d/                       1352   0.0
AFE843 (AFE843Q) /CSM/AF/AFE8-B/AFE843Q.Seq.d/                       1350   0.0
VFG118 (VFG118Q) /CSM/VF/VFG1-A/VFG118Q.Seq.d/                       1344   0.0
VFO838 (VFO838Q) /CSM/VF/VFO8-B/VFO838Q.Seq.d/                       1314   0.0
VFM456 (VFM456Q) /CSM/VF/VFM4-C/VFM456Q.Seq.d/                       1300   0.0
SLH304 (SLH304Q) /CSM/SL/SLH3-A/SLH304Q.Seq.d/                       1298   0.0
VSE557 (VSE557Q) /CSM/VS/VSE5-C/VSE557Q.Seq.d/                       1154   0.0
SLE479 (SLE479Q) /CSM/SL/SLE4-D/SLE479Q.Seq.d/                       1136   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR408727|AR408727.1 Sequence 6 from patent US 6632636.             58   4e-19  7
AX067431|AX067431.1 Sequence 6 from Patent WO0078968.              58   4e-19  7
CR291438|CR291438.1 Oryza sativa  cDNA clone:y760d06p5.            48   4e-18  5
AK114217|AK114217.1 Ciona intestinalis cDNA, clone:cicl047d06, full insert sequence.    44   2e-15  6
CR291440|CR291440.1 Oryza sativa  cDNA clone:y760d06p3.            58   1e-12  3
BF779722|BF779722.1 3233-33 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3233-33, mRNA sequence.    72   2e-09  2
AV987567|AV987567.1 Ciona intestinalis cDNA, clone:cicl52o11, 5' end, single read.    44   2e-09  3
BW267913|BW267913.1 Ciona intestinalis cDNA, clone:cign049b08, 5' end, single read.    40   3e-09  4
BW031520|BW031520.1 Ciona intestinalis cDNA, clone:cibd018i01, 5' end, single read.    40   3e-09  4
BW219409|BW219409.1 Ciona intestinalis cDNA, clone:cieg096e01, 5' end, single read.    40   4e-09  4
dna update 2004. 3. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JD9) RecName: Full=Probable succinyl-CoA:3-ketoacid-coenzyme...   430   e-119
BC080373_1(BC080373|pid:none) Xenopus tropicalis oxct1 protein, ...   290   1e-76
AK312327_1(AK312327|pid:none) Homo sapiens cDNA, FLJ92639, highl...   287   6e-76
BC042239_1(BC042239|pid:none) Xenopus laevis hypothetical protei...   287   6e-76
BC124298_1(BC124298|pid:none) Danio rerio 3-oxoacid CoA transfer...   286   1e-75
CR457049_1(CR457049|pid:none) Homo sapiens full open reading fra...   285   2e-75
AK299668_1(AK299668|pid:none) Homo sapiens cDNA FLJ51747 complet...   285   3e-75
(Q9D0K2) RecName: Full=Succinyl-CoA:3-ketoacid-coenzyme A transf...   284   4e-75
CR860738_1(CR860738|pid:none) Pongo abelii mRNA; cDNA DKFZp459B1...   284   4e-75
AB172465_1(AB172465|pid:none) Macaca fascicularis brain cDNA clo...   283   7e-75
protein update 2009. 5.14
PSORT 

 psg: 0.57  gvh: 0.39  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for CFF695 is mit
5' end seq. ID CFF695F
5' end seq. 
>CFF695F.Seq
ATATCCTTAAAGATGTTATCAAGAAATTTAAAAACTTTAGTTAAAAATAAAAATATATTA
TATTTTACTACATCAACTAGTAAATCAAATAAAATTTATGAAAATGCAAAGGAAGCAGTT
AAAGATATTCCAAATGGTTCAAAATTATTAGTAGGTGGATTTGGACTTTGTGGTATTCCA
GAGAATTTAATATCAGCAGTACGTGATACAGGTGTAAAGGATTTAACAGTTGTTAGTAAT
AATGCAGGTGTTGATGATTTTGGATTAGGTGTTTTATTAAAGAGTAGACAAATTAAAAGA
ATGATCTCATCATATGTTGGTGAGAATGCAACCTTTGAGAGTCAATATCTCAAGGGTGAG
CTTGAAGTAGAGTTAACACCACAAGGTAATTTAGCAGAGAGATTAAGAGCAGGTGGTGCA
GGTATTCCAGCTTTCTATACAAGTACAGGTGTTGGTACAGTGTTGGTGGAAGAAGGTGGT
TTCCCAATCAAGTATGCAAATGATGGTTCAGGTAAAGTTGAAATTAAGAGCGAACCACGT
CCAACTCAACTTTACAATGGTCGTAA----------
Length of 5' end seq. 566
3' end seq. ID CFF695Z
3' end seq. 
>CFF695Z.Seq
----------AGCAGCTGCCAAACCAAAGGATGAGGCAGCAGCCAAGAGAGAGCGTATCG
TACGTCGTGCAGCTTTAGAGTTTGAAGATGGTATGTATTGTAATCTTGGTATTGGTATGC
CAACATTGGCCAGTAATTTCATTCCAAAGGGTATTAGAATCGAATTACAATCAGAGAATG
GCTTATTAGGTATGGGTCCATTCCCAAAAATGGGCGAACATGATGCCGATTTAATCAATG
CAGGTAAGGAAACCGTTACAACCATTCCAGGTTCTTCCATTTTCTCAAGTGCTGATTCAT
TCGCAATGATTCGTGGTGGTCATGTTGATTTAACAATTCTTGGTGGTATGCAAGTTAGTG
GTAATGGTGATTTGGCCAATTGGGTCATTCCTGGCTCAATGGTTAAAGGTCCAGGTGGTG
CTATGGATTTAACTTCAAGTGGTTCACGTGTAGTTGTCATAATGGAACATACCACAAAAC
ATGGAAAACCAAAGATTTTAAAGAATTGTACACTTCCACTCACTGGTAAATCTTGTGTAA
ATAGAATCATCACTGAATTGGCAGTTTTCGATGTCGTCAATGGTAAATTAGAATTAATTG
AAGTCGTTGATGGCCAAACAGTTGATGATATTAAATCTAAAACTGAAGCAGAATTTACTG
TTTCAAAAAATTTAAAACCATTACAACAAGTTGAAATTTAAAATAATAATAATAATAATA
ATAAAAATATCAACATTTCCT
Length of 3' end seq. 731
Connected seq. ID CFF695P
Connected seq. 
>CFF695P.Seq
ATATCCTTAAAGATGTTATCAAGAAATTTAAAAACTTTAGTTAAAAATAAAAATATATTA
TATTTTACTACATCAACTAGTAAATCAAATAAAATTTATGAAAATGCAAAGGAAGCAGTT
AAAGATATTCCAAATGGTTCAAAATTATTAGTAGGTGGATTTGGACTTTGTGGTATTCCA
GAGAATTTAATATCAGCAGTACGTGATACAGGTGTAAAGGATTTAACAGTTGTTAGTAAT
AATGCAGGTGTTGATGATTTTGGATTAGGTGTTTTATTAAAGAGTAGACAAATTAAAAGA
ATGATCTCATCATATGTTGGTGAGAATGCAACCTTTGAGAGTCAATATCTCAAGGGTGAG
CTTGAAGTAGAGTTAACACCACAAGGTAATTTAGCAGAGAGATTAAGAGCAGGTGGTGCA
GGTATTCCAGCTTTCTATACAAGTACAGGTGTTGGTACAGTGTTGGTGGAAGAAGGTGGT
TTCCCAATCAAGTATGCAAATGATGGTTCAGGTAAAGTTGAAATTAAGAGCGAACCACGT
CCAACTCAACTTTACAATGGTCGTAA----------AGCAGCTGCCAAACCAAAGGATGA
GGCAGCAGCCAAGAGAGAGCGTATCGTACGTCGTGCAGCTTTAGAGTTTGAAGATGGTAT
GTATTGTAATCTTGGTATTGGTATGCCAACATTGGCCAGTAATTTCATTCCAAAGGGTAT
TAGAATCGAATTACAATCAGAGAATGGCTTATTAGGTATGGGTCCATTCCCAAAAATGGG
CGAACATGATGCCGATTTAATCAATGCAGGTAAGGAAACCGTTACAACCATTCCAGGTTC
TTCCATTTTCTCAAGTGCTGATTCATTCGCAATGATTCGTGGTGGTCATGTTGATTTAAC
AATTCTTGGTGGTATGCAAGTTAGTGGTAATGGTGATTTGGCCAATTGGGTCATTCCTGG
CTCAATGGTTAAAGGTCCAGGTGGTGCTATGGATTTAACTTCAAGTGGTTCACGTGTAGT
TGTCATAATGGAACATACCACAAAACATGGAAAACCAAAGATTTTAAAGAATTGTACACT
TCCACTCACTGGTAAATCTTGTGTAAATAGAATCATCACTGAATTGGCAGTTTTCGATGT
CGTCAATGGTAAATTAGAATTAATTGAAGTCGTTGATGGCCAAACAGTTGATGATATTAA
ATCTAAAACTGAAGCAGAATTTACTGTTTCAAAAAATTTAAAACCATTACAACAAGTTGA
AATTTAAAATAATAATAATAATAATAATAAAAATATCAACATTTCCT
Length of connected seq. 1297
Full length Seq ID -
Full length Seq. -
Length of full length seq. -