>CFF647 (CFF647Q) /CSM/CF/CFF6-B/CFF647Q.Seq.d/
XXXXXXXXXXAATCATAGTATCATTATGATGGGTACACCAGAGTCAAATATTATTGCTGA
CGTTCCAAAAACAAGTGGTGATACCGATGAGGTATTCAATGATTTCGAATTTGATTATAT
CCCAGATTCTGATGAAATCTCTCATATTGAAAAAAATAAAAATCAATTACTTGCAATGAT
TGAACGTTCAAATGATATCTCTTTAATTAATGACCCAAGACCAAATAAAAAATTATTAGT
TTTAGATTTAGATCATACAATTTTAGATTTTAAAGATCAAGATGTTGAAAATATGAAAAG
ACCACATTTAGAAGAATTTTTAGTACAATCCTATCAACATTATGATATTGGAATTTGGTC
TCAAACTAGTTGGAAATGGATTGAAATTAAATTAACAGAGTTGGGATTATTAACTAATCC
ACGTTTTAAAATTTGTTTTGTAATGGATCAAACATTAATGTTTAAGGTAACAACCTATAG
AACCATCAATGGTAAAGAGAGAACTAAAATTAAACATAATGTAAAAGCATTGGAAGTAAT
TTGGAAACATCAACATTTAGGTAAATTCTTTAGTATGAAAAATACTTTACATGTTGATGA
TCTCTCCAAAAACTTTGCAATGAATCCAAAGAATT

---HSIIMMGTPESNIIADVPKTSGDTDEVFNDFEFDYIPDSDEISHIEKNKNQLLAMIE
RSNDISLINDPRPNKKLLVLDLDHTILDFKDQDVENMKRPHLEEFLVQSYQHYDIGIWSQ
TSWKWIEIKLTELGLLTNPRFKICFVMDQTLMFKVTTYRTINGKERTKIKHNVKALEVIW
KHQHLGKFFSMKNTLHVDDLSKNFAMNPKN

Frame A:
---iivsl*wvhqsqillltfqkqvvipmrysmisnliisqilmkslilkkikinylq*l
nvqmisl*lmtqdqikny*f*i*iiqf*ilkikmlki*kdhi*knf*ynpinimilefgl
klvgnglkln*qswdy*lihvlkfvl*wikh*clr*qpiepsmvkrelklnim*khwk*f
gnini*vnslv*kilymlmispktlq*iqri


Frame B:
---s*yhydgytrvkyyc*rsknkw*yr*giq*fri*lyprf**nlsy*kk*ksitcnd*
tfk*ylfn**pktk*kiisfrfrsynfrf*rsrc*kyekttfrrifstilstl*ywnlvs
n*lemd*n*inrvgiin*stf*nlfcngsninv*gnnl*nhqw*ren*n*t*cksigsnl
etstfr*il*yekyftc**slqklcneske


Frame C:
---HSIIMMGTPESNIIADVPKTSGDTDEVFNDFEFDYIPDSDEISHIEKNKNQLLAMIE
RSNDISLINDPRPNKKLLVLDLDHTILDFKDQDVENMKRPHLEEFLVQSYQHYDIGIWSQ
TSWKWIEIKLTELGLLTNPRFKICFVMDQTLMFKVTTYRTINGKERTKIKHNVKALEVIW
KHQHLGKFFSMKNTLHVDDLSKNFAMNPKN

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF647 (CFF647Q) /CSM/CF/CFF6-B/CFF647Q.Seq.d/                        938   0.0
VFA658 (VFA658Q) /CSM/VF/VFA6-C/VFA658Q.Seq.d/                        936   0.0
SSK715 (SSK715Q) /CSM/SS/SSK7-A/SSK715Q.Seq.d/                        936   0.0
SFH658 (SFH658Q) /CSM/SF/SFH6-C/SFH658Q.Seq.d/                        936   0.0
SFG712 (SFG712Q) /CSM/SF/SFG7-A/SFG712Q.Seq.d/                        936   0.0
SFG351 (SFG351Q) /CSM/SF/SFG3-C/SFG351Q.Seq.d/                        936   0.0
SFF746 (SFF746Q) /CSM/SF/SFF7-B/SFF746Q.Seq.d/                        936   0.0
SFF548 (SFF548Q) /CSM/SF/SFF5-B/SFF548Q.Seq.d/                        936   0.0
SFF186 (SFF186Q) /CSM/SF/SFF1-D/SFF186Q.Seq.d/                        936   0.0
SFB575 (SFB575Q) /CSM/SF/SFB5-D/SFB575Q.Seq.d/                        936   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   682   0.0    16
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   1e-04  15
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    30   3e-04  13
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    34   0.001  10
AE014016|AE014016.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 1 of 2 of the complete genome.    42   0.003  12
AC022026|AC022026.7 Homo sapiens chromosome 10 clone RP11-506B4, complete sequence.    36   0.004  7
AE015937|AE015937.1 Clostridium tetani E88, section 2 of 10 of the complete genome.    36   0.009  11
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5.    34   0.010  10
AL161735|AL161735.8 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-347L19.    32   0.013  11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    32   0.037  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_106(AC116984|pid:none) Dictyostelium discoideum chromos...   430   e-119
(Q2KJD7) RecName: Full=Ubiquitin-like domain-containing CTD phos...   146   4e-34
AY893165_1(AY893165|pid:none) Synthetic construct Homo sapiens c...   146   4e-34
(Q8BGR9) RecName: Full=Ubiquitin-like domain-containing CTD phos...   146   5e-34
(Q28EX9) RecName: Full=Ubiquitin-like domain-containing CTD phos...   143   3e-33
AE017344_321(AE017344|pid:none) Cryptococcus neoformans var. neo...   135   7e-31
(Q8W3M6) RecName: Full=Ubiquitin-like domain-containing CTD phos...   127   3e-28
EU961853_1(EU961853|pid:none) Zea mays clone 238650 ubiquitin-li...   124   2e-27
CP001327_139(CP001327|pid:none) Micromonas sp. RCC299 chromosome...   124   2e-27
AE014297_3394(AE014297|pid:none) Drosophila melanogaster chromos...   119   9e-26

 psg: 0.75  gvh: 0.43  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFF647 is cyt

>CFF647Z.Seq
----------AATCATAGTATCATTATGATGGGTACACCAGAGTCAAATATTATTGCTGA
CGTTCCAAAAACAAGTGGTGATACCGATGAGGTATTCAATGATTTCGAATTTGATTATAT
CCCAGATTCTGATGAAATCTCTCATATTGAAAAAAATAAAAATCAATTACTTGCAATGAT
TGAACGTTCAAATGATATCTCTTTAATTAATGACCCAAGACCAAATAAAAAATTATTAGT
TTTAGATTTAGATCATACAATTTTAGATTTTAAAGATCAAGATGTTGAAAATATGAAAAG
ACCACATTTAGAAGAATTTTTAGTACAATCCTATCAACATTATGATATTGGAATTTGGTC
TCAAACTAGTTGGAAATGGATTGAAATTAAATTAACAGAGTTGGGATTATTAACTAATCC
ACGTTTTAAAATTTGTTTTGTAATGGATCAAACATTAATGTTTAAGGTAACAACCTATAG
AACCATCAATGGTAAAGAGAGAACTAAAATTAAACATAATGTAAAAGCATTGGAAGTAAT
TTGGAAACATCAACATTTAGGTAAATTCTTTAGTATGAAAAATACTTTACATGTTGATGA
TCTCTCCAAAAACTTTGCAATGAATCCAAAGAATT