NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF619
Library CF
(Link to library)
Clone ID CFF619
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CFF619P
(Link to Original site)
Representative DNA sequence 
>CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XGTACAGTCGGTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGT
AATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTC
GCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTG
ATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATT
CCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAA
GAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGAT
GAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGT
CAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTA
TACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAAT
TATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTAT
GATGAACAACAACAACAACCACAAAAAGTTTCACATGATCAGCAAATCCAAGAACAACAA
GATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAGAATCT
TTAATC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---TVGNVISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTF
NLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNL
DDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQEL
INYELNLQEDQEQYELLLDQLYDEQQQQPQKVSHDQQIQEQQDKLNQEKNQQLLEQEQNQ
ESLI
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---vqsvt*slilihqlvklhlvmviplvrplvplvihwlihslvqiqsv*lvsi*lqrl
li*llvvnltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinq*nlki*ki
*mmk*fvillrkckfnvkikilvnkikkiknn*liykienlvytkinkilnkrkepinkn
*simn*iykkiknnmnfy*insmmnnnnnhkkfhmisksknnkin*ikkkinny*nknki
knl*

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---ysr*rnl*flyinw*nciw*w*fp**dhwyhw*yigsyirwyrfsrcnwfpynykdf
*fdcww*i*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsinei*rskkf
r**sns*ys*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*treksqstri
nql*ieftrrsrti*tfirstl**ttttttksft*sanprttr*iksrkkstiirtrtks
rifn

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---TVGNVISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTF
NLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNL
DDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQEL
INYELNLQEDQEQYELLLDQLYDEQQQQPQKVSHDQQIQEQQDKLNQEKNQQLLEQEQNQ
ESLI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                       1396   0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                       1211   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                       1189   0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/                       1174   0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                       1172   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                       1166   0.0
SFB370 (SFB370Q) /CSM/SF/SFB3-C/SFB370Q.Seq.d/                       1162   0.0
SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/                       1142   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                       1134   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                       1116   0.0
own update 2002. 9.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1259   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    42   6e-09  15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   5e-08  16
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42   2e-07  6
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   3e-07  15
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   6e-07  15
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    44   8e-07  13
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    40   3e-06  10
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   4e-06  11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    40   1e-05  14
dna update 2004. 1.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   356   6e-97
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   1e-04
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl...    49   3e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   6e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   0.001
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.003
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.003
protein update 2009. 5.14
PSORT 

 psg: 0.73  gvh: 0.42  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CFF619 is nuc
5' end seq. ID CFF619F
5' end seq. 
>CFF619F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-
Length of 5' end seq. 111
3' end seq. ID CFF619Z
3' end seq. 
>CFF619Z.Seq
----------GTACAGTCGGTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATT
GCATCTGGTAATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCT
CATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACT
TTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTAC
GGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAA
CAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAAT
TTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAA
GATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAA
CCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAA
TTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGAT
CAACTCTATGATGAACAACAACAACAACCACAAAAAGTTTCACATGATCAGCAAATCCAA
GAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAAT
CAAGAATCTTTAATC
Length of 3' end seq. 725
Connected seq. ID CFF619P
Connected seq. 
>CFF619P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-GTACAGTCGGTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGT
AATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTC
GCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTG
ATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATT
CCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAA
GAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGAT
GAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGT
CAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTA
TACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAAT
TATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTAT
GATGAACAACAACAACAACCACAAAAAGTTTCACATGATCAGCAAATCCAAGAACAACAA
GATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAGAATCT
TTAATC
Length of connected seq. 836
Full length Seq ID -
Full length Seq. -
Length of full length seq. -