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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF579
Library CF
(Link to library)
Clone ID CFF579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13884-1
Original site URL
Representative seq. ID CFF579P
(Link to Original site)
Representative DNA sequence 
>CFF579 (CFF579Q) /CSM/CF/CFF5-D/CFF579Q.Seq.d/
CAACCAGTGTCTGTGTTTTAGCTGGTGAATTATTAAGAGAGGGTGAAAGATTAGTTCAAC
AAAAAGTCCATCCACAAACTATTATTAGTGGTTGGAGATTAGCACTTGAAACTGCACGTG
CTGCATTACAATCATCAACTCAAGATCATTCTTCAGATAAAGTTAAATTTAGAGAAGATT
TATTAAATATAGCAAGAACAACATTAAGTTCAAAGATTTTACATACAGAGAAAGATCATT
TCGCAAATATGGTAGTTGATGCAGTTTTAAGATTAAATGGAAATACCAATTTAGATAATA
TTCATATTATAAAGAAGAGTGGTGGTTCATTAAGAGAGTCCTATTTAGATGAAGGATTCA
TTTTAGAAAAGAAGATTGGTGTTGGTTGTCCAAAACGTTTAGAGAATCCAAAGATTTTAA
TTGCAAACACAGCTATGGATACTGATAAGATTAAGATTTTCGGTGGTAAGGTTGTTGTAG
ATTCAATGACTGAACTCGCCAAAATGGAAGATGCAGAAAAAGAGAAAATGTTGAATXXXX
XXXXXXAACTGGCGCTGAAATCGTCTCAACTTTTGATCACCCTGAATTGGTCAAGATTGG
CACTTGTAAACTCATTGAAGAGGTTATGATCGGTGAAGATAAGGTCATCCGTTTCTCTGG
TATTCCATCTGGTGAGGCTTGTACCATCGTTTTACGTGGTGCTACCTCTCACATTCTCGA
AGAGGCTGAACGTTCCATTCACGATGCACTCTGTGTGTTGGCTGTAACTGTAGCTGAAAC
TCGTACTGTTTTAGGTGCTGGTTGCTCAGAGATGATCATGAGTAAAGCTGTCGATGAATT
GGCTGCAATCACTCCAGGTAAGAAAGCAATGGCTATCGAATCTTTTGCCAAAGCTCTTCG
TCAAATTCCAACAATCATTGCTAATAATGCCGGTTACGATAGTTCAGAATTAGTCTCTCA
ATTAAAAGCTGCCCATCATCAAGGTGATAAAAAAGCTGGTCTCAACATGAGAGATGGTTG
TATTGGAAATGCTGAAGAATTAGGTGTCATTGAATCATTTAAAGTTAAACAACAAGTTTT
AGTATCTGCTCACGAAGCCGCTGAAATNATCATGAGAGTTGATATATCTTAAGAGCTGCT
CCAAGACAGAGAAGTAATCTTCAACATTAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
TSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDL
LNIARTTLSSKILHTEKDHFANMVVDAVLRLNGNTNLDNIHIIKKSGGSLRESYLDEGFI
LEKKIGVGCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEKEKMLN--
-

---TGAEIVSTFDHPELVKIGTCKLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHIL
EEAERSIHDALCVLAVTVAETRTVLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKAL
RQIPTIIANNAGYDSSELVSQLKAAHHQGDKKAGLNMRDGCIGNAEELGVIESFKVKQQV
LVSAHEAAEXIMRVDIS*ellqdrevifnikk
Translated Amino Acid sequence (All Frames) 
Frame A:
qpvsvf*lvny*ervkd*fnkksihklllvvgd*hlklhvlhynhqlkiilqiklnleki
y*i*qeqh*vqrfyiqrkiisqiw*lmqf*d*meipi*iifil*rrvvvh*espi*mkds
f*krrlvlvvqnv*riqrf*lqtqlwilirlrfsvvrll*iq*lnspkwkmqkkrkc*--
-

---nwr*nrlnf*sp*igqdwhl*th*rgydr*r*ghpflwysiw*glyhrftwcylshs
rrg*tfhsrctlcvgcncs*nsycfrcwllrddhe*scr*igcnhsr*esngyrifcqss
ssnsnnhc**crlr*frislsikscpssr**kswsqherwlywkc*rirch*ii*s*tts
fsicsrsr*nxhes*yilraaprqrsnlqh*k

Frame B:
nqclcfsw*iikrg*kisstkspstnyy*wleist*nctccitiinsrsffr*s*i*rrf
ikysknnikfkdftyrersfrkygs*csfkikwkyqfr*ysyykeewwfikrvlfr*rih
frkedwcwlsktfreskdfnckhsygy**d*dfrw*gccrfnd*trqngrcrkrenve--
-

---TGAEIVSTFDHPELVKIGTCKLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHIL
EEAERSIHDALCVLAVTVAETRTVLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKAL
RQIPTIIANNAGYDSSELVSQLKAAHHQGDKKAGLNMRDGCIGNAEELGVIESFKVKQQV
LVSAHEAAEXIMRVDIS*ellqdrevifnikk

Frame C:
TSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDL
LNIARTTLSSKILHTEKDHFANMVVDAVLRLNGNTNLDNIHIIKKSGGSLRESYLDEGFI
LEKKIGVGCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEKEKMLN--
-

---lalkssqllitlnwsrlalvnslkrl*svkirssvslvfhlvrlvpsfyvvlpltfs
krlnvpftmhsvcwl*l*lklvlf*vlvaqr*s*vklsmnwlqslqvrkqwlsnllpklf
vkfqqsllimpvtivqn*sln*klpiikvikklvst*emvvlemlkn*vslnhlklnnkf
*ylltkplkxs*eliylkscsktek*sstlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF579 (CFF579Q) /CSM/CF/CFF5-D/CFF579Q.Seq.d/                       2262   0.0
VFH779 (VFH779Q) /CSM/VF/VFH7-D/VFH779Q.Seq.d/                       1225   0.0
VFE272 (VFE272Q) /CSM/VF/VFE2-C/VFE272Q.Seq.d/                       1225   0.0
SFJ659 (SFJ659Q) /CSM/SF/SFJ6-C/SFJ659Q.Seq.d/                       1225   0.0
SFG790 (SFG790Q) /CSM/SF/SFG7-D/SFG790Q.Seq.d/                       1225   0.0
CFJ360 (CFJ360Q) /CSM/CF/CFJ3-C/CFJ360Q.Seq.d/                       1225   0.0
AFM845 (AFM845Q) /CSM/AF/AFM8-B/AFM845Q.Seq.d/                       1225   0.0
AFE744 (AFE744Q) /CSM/AF/AFE7-B/AFE744Q.Seq.d/                       1225   0.0
VFG888 (VFG888Q) /CSM/VF/VFG8-D/VFG888Q.Seq.d/                       1223   0.0
VFN218 (VFN218Q) /CSM/VF/VFN2-A/VFN218Q.Seq.d/                       1209   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF442546|AF442546.1 Physarum polycephalum CCT chaperonin beta subunit mRNA, complete cds.    40   3e-14  6
AQ935759|AQ935759.1 CpG2634B CpIOWAgDNA1 Cryptosporidium parvum genomic similar to T-complex protein 1, Beta subunit (TCP-1-BETA) homologue, DNA sequence.    50   5e-10  3
AQ842891|AQ842891.1 CpG1332B CpIOWAgDNA1 Cryptosporidium parvum genomic similar to T-complex protein 1, beta subunit (TCP-1-beta), genomic survey sequence.    50   6e-10  3
AX489060|AX489060.1 Sequence 6360 from Patent WO02053728.          44   6e-09  4
CC818757|CC818757.1 1O0005H08F Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0005H08 F, genomic survey sequence.    52   8e-09  4
BE618039|BE618039.1 601462202F1 NIH_MGC_67 Homo sapiens cDNA clone IMAGE:3865656 5', mRNA sequence.    50   2e-08  4
AW766196|AW766196.1 da83e09.y1 Harland stage 19-23 Xenopus laevis cDNA clone IMAGE:3201544 5' similar to gb:Z31553 M.musculus (MOUSE);, mRNA sequence.    58   2e-08  3
CB152493|CB152493.1 K-EST0209693 C1SNU17 Homo sapiens cDNA clone C1SNU17-39-H12 5', mRNA sequence.    50   2e-08  4
BF164714|BF164714.1 601777615F1 NCI_CGAP_Lu29 Mus musculus cDNA clone IMAGE:4019498 5', mRNA sequence.    62   2e-08  2
BE369941|BE369941.1 601221161F1 NCI_CGAP_Lu29 Mus musculus cDNA clone IMAGE:3590103 5', mRNA sequence.    62   2e-08  2
dna update 2004. 1.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ES9) RecName: Full=T-complex protein 1 subunit beta;        ...   369   e-103
AF442546_1(AF442546|pid:none) Physarum polycephalum CCT chaperon...   282   2e-74
BC075536_1(BC075536|pid:none) Xenopus tropicalis chaperonin cont...   276   1e-72
BT045297_1(BT045297|pid:none) Salmo salar clone ssal-rgf-517-310...   273   1e-71
AK316397_1(AK316397|pid:none) Homo sapiens cDNA, FLJ79296 comple...   271   3e-71
BC153468_1(BC153468|pid:none) Danio rerio chaperonin containing ...   271   3e-71
BC059558_1(BC059558|pid:none) Danio rerio chaperonin containing ...   271   3e-71
AK302157_1(AK302157|pid:none) Homo sapiens cDNA FLJ52359 complet...   269   1e-70
(P80314) RecName: Full=T-complex protein 1 subunit beta;        ...   269   1e-70
AK290767_1(AK290767|pid:none) Homo sapiens cDNA FLJ75037 complet...   269   1e-70
protein update 2009. 5.14
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFF579 is cyt
5' end seq. ID CFF579F
5' end seq. 
>CFF579F.Seq
CAACCAGTGTCTGTGTTTTAGCTGGTGAATTATTAAGAGAGGGTGAAAGATTAGTTCAAC
AAAAAGTCCATCCACAAACTATTATTAGTGGTTGGAGATTAGCACTTGAAACTGCACGTG
CTGCATTACAATCATCAACTCAAGATCATTCTTCAGATAAAGTTAAATTTAGAGAAGATT
TATTAAATATAGCAAGAACAACATTAAGTTCAAAGATTTTACATACAGAGAAAGATCATT
TCGCAAATATGGTAGTTGATGCAGTTTTAAGATTAAATGGAAATACCAATTTAGATAATA
TTCATATTATAAAGAAGAGTGGTGGTTCATTAAGAGAGTCCTATTTAGATGAAGGATTCA
TTTTAGAAAAGAAGATTGGTGTTGGTTGTCCAAAACGTTTAGAGAATCCAAAGATTTTAA
TTGCAAACACAGCTATGGATACTGATAAGATTAAGATTTTCGGTGGTAAGGTTGTTGTAG
ATTCAATGACTGAACTCGCCAAAATGGAAGATGCAGAAAAAGAGAAAATGTTGAAT----
------
Length of 5' end seq. 536
3' end seq. ID CFF579Z
3' end seq. 
>CFF579Z.Seq
----------AACTGGCGCTGAAATCGTCTCAACTTTTGATCACCCTGAATTGGTCAAGA
TTGGCACTTGTAAACTCATTGAAGAGGTTATGATCGGTGAAGATAAGGTCATCCGTTTCT
CTGGTATTCCATCTGGTGAGGCTTGTACCATCGTTTTACGTGGTGCTACCTCTCACATTC
TCGAAGAGGCTGAACGTTCCATTCACGATGCACTCTGTGTGTTGGCTGTAACTGTAGCTG
AAACTCGTACTGTTTTAGGTGCTGGTTGCTCAGAGATGATCATGAGTAAAGCTGTCGATG
AATTGGCTGCAATCACTCCAGGTAAGAAAGCAATGGCTATCGAATCTTTTGCCAAAGCTC
TTCGTCAAATTCCAACAATCATTGCTAATAATGCCGGTTACGATAGTTCAGAATTAGTCT
CTCAATTAAAAGCTGCCCATCATCAAGGTGATAAAAAAGCTGGTCTCAACATGAGAGATG
GTTGTATTGGAAATGCTGAAGAATTAGGTGTCATTGAATCATTTAAAGTTAAACAACAAG
TTTTAGTATCTGCTCACGAAGCCGCTGAAATNATCATGAGAGTTGATATATCTTAAGAGC
TGCTCCAAGACAGAGAAGTAATCTTCAACATTAAAAAA
Length of 3' end seq. 628
Connected seq. ID CFF579P
Connected seq. 
>CFF579P.Seq
CAACCAGTGTCTGTGTTTTAGCTGGTGAATTATTAAGAGAGGGTGAAAGATTAGTTCAAC
AAAAAGTCCATCCACAAACTATTATTAGTGGTTGGAGATTAGCACTTGAAACTGCACGTG
CTGCATTACAATCATCAACTCAAGATCATTCTTCAGATAAAGTTAAATTTAGAGAAGATT
TATTAAATATAGCAAGAACAACATTAAGTTCAAAGATTTTACATACAGAGAAAGATCATT
TCGCAAATATGGTAGTTGATGCAGTTTTAAGATTAAATGGAAATACCAATTTAGATAATA
TTCATATTATAAAGAAGAGTGGTGGTTCATTAAGAGAGTCCTATTTAGATGAAGGATTCA
TTTTAGAAAAGAAGATTGGTGTTGGTTGTCCAAAACGTTTAGAGAATCCAAAGATTTTAA
TTGCAAACACAGCTATGGATACTGATAAGATTAAGATTTTCGGTGGTAAGGTTGTTGTAG
ATTCAATGACTGAACTCGCCAAAATGGAAGATGCAGAAAAAGAGAAAATGTTGAAT----
------AACTGGCGCTGAAATCGTCTCAACTTTTGATCACCCTGAATTGGTCAAGATTGG
CACTTGTAAACTCATTGAAGAGGTTATGATCGGTGAAGATAAGGTCATCCGTTTCTCTGG
TATTCCATCTGGTGAGGCTTGTACCATCGTTTTACGTGGTGCTACCTCTCACATTCTCGA
AGAGGCTGAACGTTCCATTCACGATGCACTCTGTGTGTTGGCTGTAACTGTAGCTGAAAC
TCGTACTGTTTTAGGTGCTGGTTGCTCAGAGATGATCATGAGTAAAGCTGTCGATGAATT
GGCTGCAATCACTCCAGGTAAGAAAGCAATGGCTATCGAATCTTTTGCCAAAGCTCTTCG
TCAAATTCCAACAATCATTGCTAATAATGCCGGTTACGATAGTTCAGAATTAGTCTCTCA
ATTAAAAGCTGCCCATCATCAAGGTGATAAAAAAGCTGGTCTCAACATGAGAGATGGTTG
TATTGGAAATGCTGAAGAATTAGGTGTCATTGAATCATTTAAAGTTAAACAACAAGTTTT
AGTATCTGCTCACGAAGCCGCTGAAATNATCATGAGAGTTGATATATCTTAAGAGCTGCT
CCAAGACAGAGAAGTAATCTTCAACATTAAAAAA
Length of connected seq. 1164
Full length Seq ID -
Full length Seq. -
Length of full length seq. -