CFF515
Library CF
(Link to library)
Clone ID CFF515
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13855-1
Original site URL
Representative seq. ID CFF515P
(Link to Original site)
Representative DNA sequence
>CFF515 (CFF515Q) /CSM/CF/CFF5-A/CFF515Q.Seq.d/
ATGTTTGCGAAATTTAAAAAATTTTAATTTAATTTTTTTAAAATTTTTTTATTTTGCATG
ATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTATTTTTTAGNGTCATAATTCATCAAG
CAAAGCAACCACAACANGAACAACANCAACAAATGTCAATTTTAAAAAGTTTTATTGAAG
TTAGTGAAGATTCACACTTTCCAATTCAAAATCTTCCATATGGNGTCTTTAAACCAACCC
TAAATGATCAAGCTAGAATTGGNGTTGCTATTGGTGATTTCGTTTGNGATTTATCAAGTT
TTAGCAGATTTAAAACTTTTTGATGGTAAATTAAAAGATACTAAAGTTTTTCATCAAGAA
AATTTAAATTCATTTATGTCATTAGGTAAAGAATTATGGAGTGAAGCTAGAAAAACCATT
CAAAATTTATTATCATCAGAAACATCAACTATTAGAGATAATAAAGAGTATAGAGAAAAG
ATATTTCATTCAATTTCAAGTXXXXXXXXXXAGAATCANCCAAATTGGGTGAACCAATTT
CAATTGAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTTTGAATGATTGGAGTGCAA
GAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCTTGGCAAAGAATTTCGGCT
CAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACCATTTGCTACAAAACCAC
CAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAGGTAATACTACCTTTGATA
TTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAACCTCATAAGGTTTCAACTT
CAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGGCTCATCATACTGTAAATG
GTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAATTAGTGGTCCAACTGAAG
ATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTAAAGTGGTCTCATTAGGTA
CTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATTCTGTTATCTTATCTGGTC
TTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTGAAGGTACAATTTTACCAG
CTGATAAACGTCAATAAAAAAAAATTAATTAAATAAATAAATAAATAAAGAAAACTATTT
TTAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
mfakfkkf*fnffkiflfcmiklfiifsfffyflxs*fikqsnhnxnnxnkcqf*kvllk
lvkihtfqfkifhmxslnqp*MIKLELXLLLVISFXIYQVLADLKLFDGKLKDTKVFHQE
NLNSFMSLGKELWSEARKTIQNLLSSETSTIRDNKEYREKIFHSISS---

---ESXKLGEPISIESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGSTISPWVV
TMEALQPFATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYW
TLTQQLAHHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERK
FIQDGDSVILSGLCKGNGYQIGFGNCEGTILPADKRQ*kkin*ink*ikktifk


Translated Amino Acid sequence (All Frames)
Frame A:
mfakfkkf*fnffkiflfcmiklfiifsfffyflxs*fikqsnhnxnnxnkcqf*kvllk
lvkihtfqfkifhmxslnqp*MIKLELXLLLVISFXIYQVLADLKLFDGKLKDTKVFHQE
NLNSFMSLGKELWSEARKTIQNLLSSETSTIRDNKEYREKIFHSISS---

---rixqig*tnfn*vckrsylwfgtfe*leckrypkmgirsigsilgkefrlnyitmgc
ynggiaticykttnsrsttneissrtr*yyl*y*iis*y*isknvkts*gfnfkfeihvl
dthstigssyckwl*yecw*ftwywyn*wsn*r*lwfnvgtller**sgliry*nk*rkk
ihsrw*fcyliwsl*r*wlsnwfw*l*rynfts**tsikkn*lnk*inkenyf*

Frame B:
clrnlknfnliflkffyfa**scslffhfffif*xhnssskatttxttxtnvnfkkfy*s
**rftlsnskssiwxl*tnpk*ss*nwxcyw*frlxfikf*qi*nflmvn*kilkffikk
i*ihlch*vknygvklekpfkiyyhqkhqlleiiksiekryfiqfq---

---ESXKLGEPISIESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGSTISPWVV
TMEALQPFATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYMYW
TLTQQLAHHTVNGCNMNAGDLLGTGTISGPTEDSYGSMLELSWKGSKVVSLGTETNEERK
FIQDGDSVILSGLCKGNGYQIGFGNCEGTILPADKRQ*kkin*ink*ikktifk

Frame C:
vcei*kili*ff*nffilhdkavhyffifflffxviihqakqpqxeqxqqmsilksfiev
sedshfpiqnlpygvfkptlndqarigvaigdfvxdlssfsrfktf*w*ikry*sfssrk
fkfiyvir*rime*s*knhskfiiirniny*r**rv*rkdisfnfk---

---nxpnwvnqfqlslqkiislvwyf*migvqeiskngntfhwvhswqrisaqlyhhgll
qwrhcnhllqnhqlkihnq*nifknkvilplilnyqlvlnlqkcqnlirfqlqi*ntcig
hslnnwliil*mvvi*mlviylvlvqlvvqlkiamvqcwnslgkvvkwsh*vlkqmkken
sfkmvillsylvfvkvmviklvlvivkvqfyqlinvnkkklik*ink*rklfln

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFF515 (CFF515Q) /CSM/CF/CFF5-A/CFF515Q.Seq.d/ 1982 0.0
VFL795 (VFL795Q) /CSM/VF/VFL7-D/VFL795Q.Seq.d/ 1265 0.0
SFF638 (SFF638Q) /CSM/SF/SFF6-B/SFF638Q.Seq.d/ 1265 0.0
SFD819 (SFD819Q) /CSM/SF/SFD8-A/SFD819Q.Seq.d/ 1265 0.0
SFD588 (SFD588Q) /CSM/SF/SFD5-D/SFD588Q.Seq.d/ 1265 0.0
CHD537 (CHD537Q) /CSM/CH/CHD5-B/CHD537Q.Seq.d/ 1265 0.0
CHD530 (CHD530Q) /CSM/CH/CHD5-B/CHD530Q.Seq.d/ 1265 0.0
CHC122 (CHC122Q) /CSM/CH/CHC1-A/CHC122Q.Seq.d/ 1265 0.0
CFJ568 (CFJ568Q) /CSM/CF/CFJ5-C/CFJ568Q.Seq.d/ 1265 0.0
AFE706 (AFE706Q) /CSM/AF/AFE7-A/AFE706Q.Seq.d/ 1265 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI504681|BI504681.1 BB170011A20F01.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170011A20F01 5', mRNA sequence. 64 1e-07 2
CF446374|CF446374.1 EST682719 normalized cDNA library of onion Allium cepa cDNA clone ACAHY76, mRNA sequence. 64 5e-06 1
CF440839|CF440839.1 EST677184 normalized cDNA library of onion Allium cepa cDNA clone ACAFM72, mRNA sequence. 64 5e-06 1
BM774584|BM774584.1 ra95c11.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence. 64 5e-06 1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 36 1e-05 11
BW129032|BW129032.1 Ciona intestinalis cDNA, clone:rcign001a22, 3' end, single read. 50 2e-05 3
CB377955|CB377955.1 rq05b07.y1 Heterodera glycines J3 Heterodera glycines cDNA 5' similar to TR:Q94272 Q94272 SIMILAR TO FUMARYLACETOACETASE. [1] ;, mRNA sequence. 62 2e-05 1
BW075982|BW075982.1 Ciona intestinalis cDNA, clone:rcieg067n18, 3' end, single read. 48 5e-05 3
AV888124|AV888124.1 Ciona intestinalis cDNA, clone:rcicl27h05, 3' end, single read. 48 5e-05 3
BP018255|BP018255.1 Ciona intestinalis cDNA, clone:ciad79b21, 5' end, single read. 48 5e-05 3
dna update 2004. 1.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXQ1) RecName: Full=Fumarylacetoacetase; Short=FAA; ... 441 e-122
BT078080_1(BT078080|pid:none) Lepeophtheirus salmonis clone lsal... 286 1e-75
(A5PKH3) RecName: Full=Fumarylacetoacetase; Short=FAA; ... 281 3e-74
AY891819_1(AY891819|pid:none) Synthetic construct Homo sapiens c... 281 4e-74
(P16930) RecName: Full=Fumarylacetoacetase; Short=FAA; ... 281 4e-74
BC157696_1(BC157696|pid:none) Xenopus tropicalis hypothetical pr... 278 3e-73
BC044366_1(BC044366|pid:none) Danio rerio fumarylacetoacetate hy... 277 6e-73
BC165458_1(BC165458|pid:none) Danio rerio fumarylacetoacetate hy... 277 6e-73
BT074744_1(BT074744|pid:none) Osmerus mordax clone omor-rgc-510-... 276 1e-72
CP000159_2302(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 273 1e-71
protein update 2009. 5.14
PSORT

psg: 0.95 gvh: 0.63 alm: 0.30 top: 0.53 tms: 0.07 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for CFF515 is end

5' end seq. ID CFF515F
5' end seq.
>CFF515F.Seq
ATGTTTGCGAAATTTAAAAAATTTTAATTTAATTTTTTTAAAATTTTTTTATTTTGCATG
ATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTATTTTTTAGNGTCATAATTCATCAAG
CAAAGCAACCACAACANGAACAACANCAACAAATGTCAATTTTAAAAAGTTTTATTGAAG
TTAGTGAAGATTCACACTTTCCAATTCAAAATCTTCCATATGGNGTCTTTAAACCAACCC
TAAATGATCAAGCTAGAATTGGNGTTGCTATTGGTGATTTCGTTTGNGATTTATCAAGTT
TTAGCAGATTTAAAACTTTTTGATGGTAAATTAAAAGATACTAAAGTTTTTCATCAAGAA
AATTTAAATTCATTTATGTCATTAGGTAAAGAATTATGGAGTGAAGCTAGAAAAACCATT
CAAAATTTATTATCATCAGAAACATCAACTATTAGAGATAATAAAGAGTATAGAGAAAAG
ATATTTCATTCAATTTCAAGT----------
Length of 5' end seq. 501
3' end seq. ID CFF515Z
3' end seq.
>CFF515Z.Seq
----------AGAATCANCCAAATTGGGTGAACCAATTTCAATTGAGTCTGCAAAAGATC
ATATCTTTGGTTTGGTACTTTTGAATGATTGGAGTGCAAGAGATATCCAAAAATGGGAAT
ACGTTCCATTGGGTCCATTCTTGGCAAAGAATTTCGGCTCAACTATATCACCATGGGTTG
TTACAATGGAGGCATTGCAACCATTTGCTACAAAACCACCAACTCAAGATCCACAACCAA
TGAAATATCTTCAAGAACAAGGTAATACTACCTTTGATATTGAATTATCAGTTAGTATTA
AATCTCCAAAAATGTCAAAACCTCATAAGGTTTCAACTTCAAATTTGAAATACATGTATT
GGACACTCACTCAACAATTGGCTCATCATACTGTAAATGGTTGTAATATGAATGCTGGTG
ATTTACTTGGTACTGGTACAATTAGTGGTCCAACTGAAGATAGCTATGGTTCAATGTTGG
AACTCTCTTGGAAAGGTAGTAAAGTGGTCTCATTAGGTACTGAAACAAATGAAGAAAGAA
AATTCATTCAAGATGGTGATTCTGTTATCTTATCTGGTCTTTGTAAAGGTAATGGTTATC
AAATTGGTTTTGGTAATTGTGAAGGTACAATTTTACCAGCTGATAAACGTCAATAAAAAA
AAATTAATTAAATAAATAAATAAATAAAGAAAACTATTTTTAAAT
Length of 3' end seq. 695
Connected seq. ID CFF515P
Connected seq.
>CFF515P.Seq
ATGTTTGCGAAATTTAAAAAATTTTAATTTAATTTTTTTAAAATTTTTTTATTTTGCATG
ATAAAGCTGTTCATTATTTTTTCATTTTTTTTTTATTTTTTAGNGTCATAATTCATCAAG
CAAAGCAACCACAACANGAACAACANCAACAAATGTCAATTTTAAAAAGTTTTATTGAAG
TTAGTGAAGATTCACACTTTCCAATTCAAAATCTTCCATATGGNGTCTTTAAACCAACCC
TAAATGATCAAGCTAGAATTGGNGTTGCTATTGGTGATTTCGTTTGNGATTTATCAAGTT
TTAGCAGATTTAAAACTTTTTGATGGTAAATTAAAAGATACTAAAGTTTTTCATCAAGAA
AATTTAAATTCATTTATGTCATTAGGTAAAGAATTATGGAGTGAAGCTAGAAAAACCATT
CAAAATTTATTATCATCAGAAACATCAACTATTAGAGATAATAAAGAGTATAGAGAAAAG
ATATTTCATTCAATTTCAAGT----------AGAATCANCCAAATTGGGTGAACCAATTT
CAATTGAGTCTGCAAAAGATCATATCTTTGGTTTGGTACTTTTGAATGATTGGAGTGCAA
GAGATATCCAAAAATGGGAATACGTTCCATTGGGTCCATTCTTGGCAAAGAATTTCGGCT
CAACTATATCACCATGGGTTGTTACAATGGAGGCATTGCAACCATTTGCTACAAAACCAC
CAACTCAAGATCCACAACCAATGAAATATCTTCAAGAACAAGGTAATACTACCTTTGATA
TTGAATTATCAGTTAGTATTAAATCTCCAAAAATGTCAAAACCTCATAAGGTTTCAACTT
CAAATTTGAAATACATGTATTGGACACTCACTCAACAATTGGCTCATCATACTGTAAATG
GTTGTAATATGAATGCTGGTGATTTACTTGGTACTGGTACAATTAGTGGTCCAACTGAAG
ATAGCTATGGTTCAATGTTGGAACTCTCTTGGAAAGGTAGTAAAGTGGTCTCATTAGGTA
CTGAAACAAATGAAGAAAGAAAATTCATTCAAGATGGTGATTCTGTTATCTTATCTGGTC
TTTGTAAAGGTAATGGTTATCAAATTGGTTTTGGTAATTGTGAAGGTACAATTTTACCAG
CTGATAAACGTCAATAAAAAAAAATTAATTAAATAAATAAATAAATAAAGAAAACTATTT
TTAAAT
Length of connected seq. 1196
Full length Seq ID -
Full length Seq. -
Length of full length seq. -