CFF358
Library CF
(Link to library)
Clone ID CFF358
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID CFF358E
(Link to Original site)
Representative DNA sequence
>CFF358 (CFF358Q) /CSM/CF/CFF3-C/CFF358Q.Seq.d/
ATTAAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAA
AAAAAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGT
ATGTGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTT
GGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGN
GATGAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATT
GTCACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGN
GTTGCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTTCATTAAATCCAAAAGCAAAT
AGAGAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCA
GGTGATGGTGTTTCCCATACTGTACCAATTTACGAAGGGTTATGCATTACCACATGCTAT
TTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGA
ACGTGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAA
ATTAGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGC
ATTAGAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTT
CCGTTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCA
TGAAACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGG
TAATGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAA
AGAATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACCAGAACG
NAAANACTCTGTATGG
sequence update 2001. 6. 9
Translated Amino Acid sequence
lnnskdfnyililnk*tnkkknkkwmxkmfkl*llimvqvcvklvllvmmlhvlfshqll
vvqdtlvlwlvwvkrihmsxmklnqkevf*hlsiqlnmvlspigmiwkksgiilfimnfx
llxrniqfx*lklh*iqkqierk*LKSCLKLSTLQQCMLPFKLYYHSMPLVVPLVSLWIQ
VMVFPILYQFTKGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEK
LAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIH
ETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPER
KXSVW


Translated Amino Acid sequence (All Frames)
Frame A:
ikqlkrf*lyfnik*ink*kkk*kmdgedvqalvidngsgmckagfagddapravfpsiv
grprhtgvmvgmgqkdsyvgdeaqskrgiltlkypiehgivtnwddmekiwhhtfynelr
vapxehpvllteaslnpkanrekmtqimfetfntpamyvaiqavlslyasgrttgivmds
gdgvshtvpiyeglcittcyftfrfsws*sy*lhdenln*twllihnnc*krnr*ry*re
isircigf*s*nancsliicireii*itrwssyynw**tfplsrstfptiilgygvcwys
*nnl*fnhem*c*ys*rfiw*cciirwynyvpryc*sye*rinctctinnen*nycttrt
xxlcm


Frame B:
lnnskdfnyililnk*tnkkknkkwmxkmfkl*llimvqvcvklvllvmmlhvlfshqll
vvqdtlvlwlvwvkrihmsxmklnqkevf*hlsiqlnmvlspigmiwkksgiilfimnfx
llxrniqfx*lklh*iqkqierk*LKSCLKLSTLQQCMLPFKLYYHSMPLVVPLVSLWIQ
VMVFPILYQFTKGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEK
LAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIH
ETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPER
KXSVW


Frame C:
*ttqkiliif*y*inkqikkkikngwxrcssfsy**wfryv*swfcw**cstccfpincw
sskthwcygwygskgficrx*ssikkryfnt*vsn*twychqlg*ygknlasyfl**tsx
csxgtsssxn*sfiksksk*rendsnhv*nfqhssnvcchssciitlclwsyhwyrygfr
*wcfpyctnlrrvmhyhmlfyv*i*lvvillit**ks*lnvvthsqqllkeksleilkrn
*htlhwilklkcklqphhlh*rnhmnyqmvkllqlvmnvsvvqkhfsnhhswvwsllvfm
kqpiiqs*nvmlifvkiymvmlyyqvvqlcsqvlliv*ikn*lhlhhqq*klkllhhqnx
xtly


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFF358 (CFF358Q) /CSM/CF/CFF3-C/CFF358Q.Seq.d/ 1986 0.0
SFL261 (SFL261Q) /CSM/SF/SFL2-C/SFL261Q.Seq.d/ 1978 0.0
SFD790 (SFD790Q) /CSM/SF/SFD7-D/SFD790Q.Seq.d/ 1978 0.0
SFD319 (SFD319Q) /CSM/SF/SFD3-A/SFD319Q.Seq.d/ 1978 0.0
CHD357 (CHD357Q) /CSM/CH/CHD3-C/CHD357Q.Seq.d/ 1978 0.0
CFI221 (CFI221Q) /CSM/CF/CFI2-A/CFI221Q.Seq.d/ 1978 0.0
SFD813 (SFD813Q) /CSM/SF/SFD8-A/SFD813Q.Seq.d/ 1970 0.0
AFE187 (AFE187Q) /CSM/AF/AFE1-D/AFE187Q.Seq.d/ 1970 0.0
AFB839 (AFB839Q) /CSM/AF/AFB8-B/AFB839Q.Seq.d/ 1970 0.0
SFG742 (SFG742Q) /CSM/SF/SFG7-B/SFG742Q.Seq.d/ 1965 0.0

own update 2002.11.18
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X03283|X03283.1 Dictyostelium discoideum gene for actin A3-S1. 842 0.0 2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 803 0.0 16
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 726 0.0 15
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 726 0.0 20
X03284|X03284.1 Dictyostelium discoideum gene for actin A3-S2. 724 0.0 3
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 702 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 678 0.0 14
M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 620 0.0 2
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 620 0.0 7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 613 0.0 13
dna update 2003.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 344 0.0
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 344 0.0
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 342 0.0
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 342 0.0
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 342 0.0
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 342 0.0
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 336 0.0
AY294152_1(AY294152|pid:none) Mayorella sp. JJP-2003 actin mRNA,... 336 0.0
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com... 335 0.0
AY294153_1(AY294153|pid:none) Platyamoeba placida actin mRNA, pa... 333 0.0
protein update 2009. 6.30
PSORT

psg: 0.82 gvh: 0.45 alm: 0.26 top: 0.53 tms: 0.07 mit: 0.41 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.38 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: mitochondrial
20.0 %: endoplasmic reticulum
16.0 %: Golgi
12.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFF358 is mit

5' end seq. ID CFF358F
5' end seq.
>CFF358F.Seq
ATTAAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAA
AAAAAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGT
ATGTGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTT
GGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGN
GATGAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATT
GTCACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGN
GTTGCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTTCATTAAATCCAAAAGCAAAT
AGAGAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTA----------
Length of 5' end seq. 517
3' end seq. ID CFF358Z
3' end seq.
>CFF358Z.Seq
----------CCAGCAATGTATGTTGCCATTCAAGCTGTATTATCACTCTATGCCTCTGG
TCGTACCACTGGTATCGTTATGGATTCAGGTGATGGTGTTTCCCATACTGTACCAATTTA
CGAAGGGTTATGCATTACCACATGCTATTTTACGTTTAGATTTAGCTGGTCGTGATCTTA
CTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACAACAACTGCTGAAA
GAGAAATCGTTAGAGATATTAAAGAGAAATTAGCATACGTTGCATTGGATTTTGAAGCTG
AAATGCAAACTGCAGCCTCATCATCTGCATTAGAGAAATCATATGAATTACCAGATGGTC
AAGTTATTACAATTGGTAATGAACGTTTCCGTTGTCCAGAAGCACTTTTCCAACCATCAT
TCTTGGGTATGGAGTCTGCTGGTATTCATGAAACAACCTATAATTCAATCATGAAATGTG
ATGTTGATATTCGTAAAGATTTATATGGTAATGTTGTATTATCAGGTGGTACAACTATGT
TCCCAGGTATTGCTGATCGTATGAATAAAGAATTAACTGCACTTGCACCATCAACAATGA
AAATTAAAATTATTGCACCACCAGAACGNAAANACTCTGTATGG
Length of 3' end seq. 634
Connected seq. ID CFF358P
Connected seq.
>CFF358P.Seq
ATTAAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAA
AAAAAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGT
ATGTGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTT
GGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGN
GATGAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATT
GTCACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGN
GTTGCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTTCATTAAATCCAAAAGCAAAT
AGAGAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTA----------CCAGCAATGTATG
TTGCCATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGG
ATTCAGGTGATGGTGTTTCCCATACTGTACCAATTTACGAAGGGTTATGCATTACCACAT
GCTATTTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTA
ACTGAACGTGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAA
GAGAAATTAGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCA
TCTGCATTAGAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAA
CGTTTCCGTTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGT
ATTCATGAAACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTA
TATGGTAATGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATG
AATAAAGAATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACCA
GAACGNAAANACTCTGTATGG
Length of connected seq. 1151
Full length Seq ID CFF358E
Full length Seq.
>CFF358E.Seq
ATTAAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAA
AAAAAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGT
ATGTGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTT
GGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGN
GATGAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATT
GTCACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGN
GTTGCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTTCATTAAATCCAAAAGCAAAT
AGAGAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCA
GGTGATGGTGTTTCCCATACTGTACCAATTTACGAAGGGTTATGCATTACCACATGCTAT
TTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGA
ACGTGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAA
ATTAGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGC
ATTAGAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTT
CCGTTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCA
TGAAACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGG
TAATGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAA
AGAATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACCAGAACG
NAAANACTCTGTATGG
Length of full length seq. 1096