>CFF350 (CFF350Q) /CSM/CF/CFF3-C/CFF350Q.Seq.d/
XXXXXXXXXXTGAATTCATTGTTACCGATTCAGCTAATATCTATGTCAATAAGGTTATAG
TAAGTCAAAAACAACAACAAGATCAACAAAAATGGTTTGAAAAGGATGCTAAAGATCATG
CCAACAAAATGGCAGCAACTAAAGATATGGAACAACATGAACATGAGGATCTCCAAAATA
CAAATGATGCTCAAAACAATGAAAATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAA
ATACCGCTAACAATAAAGCTAAACCATCATCAAATGTTAGTGATAACAAAGAAAACAATG
CTTCCAATAAAGCCAAACCATCATCAAATACCAATGATGCCAAACCAAAGACTGATGAAA
CTAAAACCAAAGCTGGTTCACCAAAAACTGATGCCAAACCAAAAACTACTCAAGATGAAT
CCCTTGATAGTGCTGATCCAGAA

---EFIVTDSANIYVNKVIVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNT
NDAQNNENAKPNSAATKDSNTANNKAKPSSNVSDNKENNASNKAKPSSNTNDAKPKTDET
KTKAGSPKTDAKPKTTQDESLDSADPE

Frame A:
---EFIVTDSANIYVNKVIVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNT
NDAQNNENAKPNSAATKDSNTANNKAKPSSNVSDNKENNASNKAKPSSNTNDAKPKTDET
KTKAGSPKTDAKPKTTQDESLDSADPE


Frame B:
---nsllpiqlismsirl**vknnnkinknglkrmlkimptkwqqlkiwnnmnmriskiq
mmlktmkmlnqiqqppkiqipltiklnhhqmlvitkktmlpikpnhhqipmmpnqrlmkl
kpklvhqklmpnqkllkmnplivliq


Frame C:
---ihcyrfs*ylcq*gysksktttrstkmv*kgc*rscqqngsn*rygtt*t*gspkyk
*cskq*kc*tkfsshqrfkyr*q*s*tiikc***qrkqcfq*sqtiikyq*cqtkd**n*
nqswftkn*cqtknysr*ip**c*sr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL677 (SSL677Q) /CSM/SS/SSL6-D/SSL677Q.Seq.d/                        858   0.0
SSK563 (SSK563Q) /CSM/SS/SSK5-C/SSK563Q.Seq.d/                        858   0.0
SSI241 (SSI241Q) /CSM/SS/SSI2-B/SSI241Q.Seq.d/                        858   0.0
SSG743 (SSG743Q) /CSM/SS/SSG7-B/SSG743Q.Seq.d/                        858   0.0
SSF377 (SSF377Q) /CSM/SS/SSF3-D/SSF377Q.Seq.d/                        858   0.0
CHR609 (CHR609Q) /CSM/CH/CHR6-A/CHR609Q.Seq.d/                        858   0.0
CHR152 (CHR152Q) /CSM/CH/CHR1-C/CHR152Q.Seq.d/                        858   0.0
CHQ367 (CHQ367Q) /CSM/CH/CHQ3-C/CHQ367Q.Seq.d/                        858   0.0
CHE847 (CHE847Q) /CSM/CH/CHE8-B/CHE847Q.Seq.d/                        858   0.0
CFF350 (CFF350Q) /CSM/CF/CFF3-C/CFF350Q.Seq.d/                        858   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC147585|AC147585.1 Otolemur garnettii clone CH256-517A4, WORKING DRAFT SEQUENCE, 7 unordered pieces.    40   9e-04  4
AC108246|AC108246.5 Rattus norvegicus clone CH230-226E23, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    54   0.002  1
AL451141|AL451141.13 Human DNA sequence from clone RP11-265E5 on chromosome 6.    36   0.005  5
AC027384|AC027384.2 Homo sapiens chromosome 1 clone RP11-225O17 map 1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    42   0.018  4
AC025355|AC025355.2 Homo sapiens chromosome 1 clone RP11-184B9 map 1, WORKING DRAFT SEQUENCE, 15 unordered pieces.    36   0.041  6
AC074112|AC074112.8 Homo sapiens BAC clone RP11-204G8 from 7, complete sequence.    38   0.061  7
AE016969|AE016969.1 Mycoplasma gallisepticum strain R section 3 of 4 of the complete genome.    38   0.064  7
AC116658|AC116658.4 Mus musculus BAC clone RP23-293I4 from 17, complete sequence.    40   0.065  8
AC021114|AC021114.3 Homo sapiens chromosome 11 clone RP11-265F24, WORKING DRAFT SEQUENCE, 22 unordered pieces.    46   0.067  6
AC129777|AC129777.2 Mus musculus chromosome UNK clone RP23-281H23, WORKING DRAFT SEQUENCE, 14 unordered pieces.    38   0.077  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF163151_1(AF163151|pid:none) Homo sapiens dentin sialophosphopr...    40   0.031
EU278622_1(EU278622|pid:none) Homo sapiens haplotype 1D dentin s...    40   0.031
EU278639_1(EU278639|pid:none) Homo sapiens haplotype 38A dentin ...    40   0.031
EU278636_1(EU278636|pid:none) Homo sapiens haplotype 36A dentin ...    40   0.031
EU284752_1(EU284752|pid:none) Homo sapiens dentin sialophosphopr...    40   0.031
AF094508_1(AF094508|pid:none) Homo sapiens dentin phosphoryn mRN...    40   0.031
EU278620_1(EU278620|pid:none) Homo sapiens haplotype 1A dentin s...    40   0.031
(Q9NZW4) RecName: Full=Dentin sialophosphoprotein; Contains:   R...    40   0.031
EU278637_1(EU278637|pid:none) Homo sapiens haplotype 37A dentin ...    40   0.031
EU278621_1(EU278621|pid:none) Homo sapiens haplotype 1B dentin s...    40   0.031

 psg: 0.75  gvh: 0.20  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFF350 is nuc

>CFF350Z.Seq
----------TGAATTCATTGTTACCGATTCAGCTAATATCTATGTCAATAAGGTTATAG
TAAGTCAAAAACAACAACAAGATCAACAAAAATGGTTTGAAAAGGATGCTAAAGATCATG
CCAACAAAATGGCAGCAACTAAAGATATGGAACAACATGAACATGAGGATCTCCAAAATA
CAAATGATGCTCAAAACAATGAAAATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAA
ATACCGCTAACAATAAAGCTAAACCATCATCAAATGTTAGTGATAACAAAGAAAACAATG
CTTCCAATAAAGCCAAACCATCATCAAATACCAATGATGCCAAACCAAAGACTGATGAAA
CTAAAACCAAAGCTGGTTCACCAAAAACTGATGCCAAACCAAAAACTACTCAAGATGAAT
CCCTTGATAGTGCTGATCCAGAA