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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF263
Library CF
(Link to library)
Clone ID CFF263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFF263P
(Link to Original site)
Representative DNA sequence 
>CFF263 (CFF263Q) /CSM/CF/CFF2-C/CFF263Q.Seq.d/
GAAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNNTTTTTTGAAAAAAAAAA
XXXXXXXXXXCAACATTGAGAATGTAAAANCAAAGATTCAAGATAAAGAAGGTATTCCAC
CAGATCANCAACGTCTCATTTCGCTGGTAANCAATTAGAAGATGGTCGTACTCTCTCTGA
TTACAATATCCAAAAAGAATCAACTCTCCCACTTGGTCCTCAGATTAAGAGGTGGTATGC
AAATCTTTGTCAAAACATTAACTGGTAAGATCATCACTCTTGAAGTTGAGGGCTCAGATA
ATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAACAAA
GATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTC
AAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATCCC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nsfyytnikfifyffiycnis*KKKKKKKXKXSXFLKKK---

---NIENVKXKIQDKEGIPPDXQRLISLVXN*kmvvlslitiskknqlshlvlrlrggmq
ifvktltgkiitlevegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniq
kestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifa
gkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktki
qdkegi
Translated Amino Acid sequence (All Frames) 
Frame A:
eilfiiqilnsyfiflyivtfhkkkkkkkxlkxxxf*kkk---

---qh*eckxkdsr*rrystrsxtshfagxqledgrtlsdyniqkestlplgpqikrwya
nlcqninw*dhhs*s*glr*y*kc*nkdsrqrgyptrptkinfrw*tirrwsysl*lqhs
kgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfr
r*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknkn
srqrryp

Frame B:
kffllyky*ihilffyil*hfikkkkkkkx*kxxffekk---

---NIENVKXKIQDKEGIPPDXQRLISLVXN*kmvvlslitiskknqlshlvlrlrggmq
ifvktltgkiitlevegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniq
kestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifa
gkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktki
qdkegi

Frame C:
nsfyytnikfifyffiycnis*KKKKKKKXKXSXFLKKK---

---tlrm*xqrfkikkvfhqixnvsfrw*xirrwsysl*lqypkrinsptwssd*evvck
slskh*lvrssllklraqiilkmlkqrfktkrvshqtnkd*fslvnn*kmvvlslittfk
rnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfsp
vnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkf
ktkkvs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF263 (CFF263Q) /CSM/CF/CFF2-C/CFF263Q.Seq.d/                       1433   0.0
CFK335 (CFK335Q) /CSM/CF/CFK3-B/CFK335Q.Seq.d/                       1403   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1396   0.0
CFF682 (CFF682Q) /CSM/CF/CFF6-D/CFF682Q.Seq.d/                       1394   0.0
SFK774 (SFK774Q) /CSM/SF/SFK7-D/SFK774Q.Seq.d/                       1386   0.0
CFJ655 (CFJ655Q) /CSM/CF/CFJ6-C/CFJ655Q.Seq.d/                       1382   0.0
CFJ273 (CFJ273Q) /CSM/CF/CFJ2-D/CFJ273Q.Seq.d/                       1382   0.0
CFF858 (CFF858Q) /CSM/CF/CFF8-C/CFF858Q.Seq.d/                       1382   0.0
CFI562 (CFI562Q) /CSM/CF/CFI5-C/CFI562Q.Seq.d/                       1378   0.0
CFH301 (CFH301Q) /CSM/CF/CFH3-A/CFH301Q.Seq.d/                       1378   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1154   0.0    4
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1138   0.0    4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1138   0.0    4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   630   0.0    4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   656   0.0    4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   513   0.0    4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   513   0.0    4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   640   e-180  4
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      163   e-102  6
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   157   4e-91  5
dna update 2004. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   414   e-114
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   414   e-114
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   414   e-114
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   410   e-113
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   396   e-109
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   395   e-108
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   394   e-108
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   394   e-108
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   394   e-108
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   394   e-108
protein update 2009. 5.13
PSORT 

 psg: 0.55  gvh: 0.10  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.60  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: cytoplasmic

>> prediction for CFF263 is nuc
5' end seq. ID CFF263F
5' end seq. 
>CFF263F.Seq
GAAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNNTTTTTTGAAAAAAAAAA
----------
Length of 5' end seq. 120
3' end seq. ID CFF263Z
3' end seq. 
>CFF263Z.Seq
----------CAACATTGAGAATGTAAAANCAAAGATTCAAGATAAAGAAGGTATTCCAC
CAGATCANCAACGTCTCATTTCGCTGGTAANCAATTAGAAGATGGTCGTACTCTCTCTGA
TTACAATATCCAAAAAGAATCAACTCTCCCACTTGGTCCTCAGATTAAGAGGTGGTATGC
AAATCTTTGTCAAAACATTAACTGGTAAGATCATCACTCTTGAAGTTGAGGGCTCAGATA
ATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAACAAA
GATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTC
AAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATCCC
Length of 3' end seq. 732
Connected seq. ID CFF263P
Connected seq. 
>CFF263P.Seq
GAAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNNTTTTTTGAAAAAAAAAA
----------CAACATTGAGAATGTAAAANCAAAGATTCAAGATAAAGAAGGTATTCCAC
CAGATCANCAACGTCTCATTTCGCTGGTAANCAATTAGAAGATGGTCGTACTCTCTCTGA
TTACAATATCCAAAAAGAATCAACTCTCCCACTTGGTCCTCAGATTAAGAGGTGGTATGC
AAATCTTTGTCAAAACATTAACTGGTAAGATCATCACTCTTGAAGTTGAGGGCTCAGATA
ATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAACAAA
GATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTC
AAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATCCC
Length of connected seq. 852
Full length Seq ID -
Full length Seq. -
Length of full length seq. -