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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF254
Library CF
(Link to library)
Clone ID CFF254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID CFF254P
(Link to Original site)
Representative DNA sequence 
>CFF254 (CFF254Q) /CSM/CF/CFF2-C/CFF254Q.Seq.d/
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGAG
GTGGTAGGTTATTTAAATAGTATTAATATTGGAXXXXXXXXXXATTCAATTCATCATTTA
AATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAA
AGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGAT
GAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAA
AACCATGTTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGAT
GAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATT
AAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCA
AAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTAT
CCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCT
GTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTT
ATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTATACCAACT
TCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTT
TAAGAAAATAATAAAAAAAATAAAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKTKVYQVVVVEVVVVEVVGYLNSINIG---

---SIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDNEASGSSNN
NDDENLNKNHVVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIGQNEGLLGK
DIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEPGYSESSLI
FSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINISF*ennkknk
Translated Amino Acid sequence (All Frames) 
Frame A:
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKTKVYQVVVVEVVVVEVVGYLNSINIG---

---iqfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnnmmkkimkqvvvvt
immmki*iktml*ivvnlhhhhliiii*mn*krkernkimksfvilnqlnslakmkdywv
kilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nvtlyqnqvtlnph*
sfqslmqnllvw*shni*liqiniivyqlqqf*lglvkfqkriqsiflfkkiikkik

Frame B:
lmqk*iiiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifk
echlmelhyteiyihnlkyfkh*kkqkyik*wwwrw**wrw*vi*ivlil---

---fnssfkf****y***w*y***rinkk*www**i**qi*kskttt**kr**skw***q
****kfk*kpcck***iyitii*lssfr*irkgkretrl*nhl*y*tn*ihwpk*riig*
ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm*lctrtrll*ilin
lfkv*ckiywfgkvtiyd*sk*illytnfnnfnld*ssfkkefnqyfflrk**kk*r

Frame C:
*cknel*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfsk
nvtlwsctiqkfiftt*nisnikknksisssgggggssgggrlfk*y*yw---

---SIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDNEASGSSNN
NDDENLNKNHVVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIGQNEGLLGK
DIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEPGYSESSLI
FSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINISF*ennkknk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF254 (CFF254Q) /CSM/CF/CFF2-C/CFF254Q.Seq.d/                       1844   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1358   0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/                       1358   0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1358   0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1358   0.0
AFE485 (AFE485Q) /CSM/AF/AFE4-D/AFE485Q.Seq.d/                       1358   0.0
AFB247 (AFB247Q) /CSM/AF/AFB2-B/AFB247Q.Seq.d/                       1358   0.0
SFJ824 (SFJ824Q) /CSM/SF/SFJ8-A/SFJ824Q.Seq.d/                       1356   0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/                       1350   0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/                       1350   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   3e-22  29
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   1e-21  26
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    48   2e-17  23
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50   9e-16  27
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   1e-15  18
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    58   1e-15  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   4e-14  24
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    46   6e-14  18
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   1e-13  24
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    46   1e-13  14
dna update 2004. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    47   0.001
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for...    36   2.4
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial...    35   3.2
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part...    35   3.2
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL...    35   3.2
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   4.2
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif...    35   4.2
(Q0VC65) RecName: Full=Transcription factor ETV6;  &BC120331_1(B...    35   4.2
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien.         35   4.2
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   5.5
protein update 2009. 5.13
PSORT 

 psg: 0.47  gvh: 0.26  alm: 0.30  top: 0.57  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFF254 is nuc
5' end seq. ID CFF254F
5' end seq. 
>CFF254F.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGAG
GTGGTAGGTTATTTAAATAGTATTAATATTGGA----------
Length of 5' end seq. 333
3' end seq. ID CFF254Z
3' end seq. 
>CFF254Z.Seq
----------ATTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGT
AGTATTAATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAA
TATAAAAATCAAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAAC
AATAATGATGATGAAAATTTAAATAAAAACCATGTTGTAAATAGTAGTGAATTTACATCA
CCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTAT
GAAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGT
AAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAA
TTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCT
GATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTA
ATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAAT
CCAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCA
AAAAAGAATTCAATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAAGA
Length of 3' end seq. 703
Connected seq. ID CFF254P
Connected seq. 
>CFF254P.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGAG
GTGGTAGGTTATTTAAATAGTATTAATATTGGA----------ATTCAATTCATCATTTA
AATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAA
AGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGAT
GAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAA
AACCATGTTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGAT
GAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATT
AAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCA
AAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTAT
CCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCT
GTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTT
ATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTATACCAACT
TCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTT
TAAGAAAATAATAAAAAAAATAAAGA
Length of connected seq. 1036
Full length Seq ID -
Full length Seq. -
Length of full length seq. -