>CFF246 (CFF246Q) /CSM/CF/CFF2-B/CFF246Q.Seq.d/
TATTGATGAATTGGCAATTGCATTAAGAGATAAACATAAATTAGAGAATAATAAAAGTAG
TGGTGGTAGTAATAATAATTTTAAAAAATCAAATAGTAATGAAACTGATGGTAATAATAG
TGTAAATATAACAAAAGATGGTCATAATTCAGTTTCACCATTAACAAAAACAACAAGAGC
AACTGAAAATACATTAAATAGTAGTAGTGGTAATGTAAATAATACAAATACTGATGGTAC
TGATGGTGGTGTAAATAATACAAATACAAATACTGATAGTGGTACAGAACCACCTCCACC
ACAAATCTCTGAAGAACCAAATGTACCAAAAGAAGTATTATGGAGGGATGAAGATGTTAC
TTCTGATGGTAGTGATATTGCTGATGATGATTTAGATAAAATTGATTTAGAATCAGTTAC
TTCTCCAGAAAATACTACAACAACAACAACAACTACAACAACAACTACAACAAGTGAACC
AAAAATTATTAGACCTGAATTTGATGAAAATTCAATAACTTTTGAAAATTTATCAGAAAC
ACTCTCAAATTTCATTGATAATTTCGGGTCAGAATCAACTAAAXXXXXXXXXX

IDELAIALRDKHKLENNKSSGGSNNNFKKSNSNETDGNNSVNITKDGHNSVSPLTKTTRA
TENTLNSSSGNVNNTNTDGTDGGVNNTNTNTDSGTEPPPPQISEEPNVPKEVLWRDEDVT
SDGSDIADDDLDKIDLESVTSPENTTTTTTTTTTTTTSEPKIIRPEFDENSITFENLSET
LSNFIDNFGSEST---

Frame A:
y**igncikr*t*ire**k*ww****f*kik***n*w***ckynkrws*fsftinknnks
n*kyik***w*ck*yky*wy*wwck*ykyky**wyrttsttnl*rtkctkrsimeg*rcy
f*w**yc***fr*n*frisyfsrkyynnnnnynnnynk*tkny*t*i**kfnnf*kfirn
tlkfh**frvrin*---


Frame B:
IDELAIALRDKHKLENNKSSGGSNNNFKKSNSNETDGNNSVNITKDGHNSVSPLTKTTRA
TENTLNSSSGNVNNTNTDGTDGGVNNTNTNTDSGTEPPPPQISEEPNVPKEVLWRDEDVT
SDGSDIADDDLDKIDLESVTSPENTTTTTTTTTTTTTSEPKIIRPEFDENSITFENLSET
LSNFIDNFGSEST---


Frame C:
lmnwqlh*einin*riikvvvvviiilknqivmklmviiv*i*qkmviiqfhh*qkqqeq
lkih*ivvvvm*iiqilmvlmvv*iiqiqilivvqnhlhhkslknqmyqkkyyggmkmll
lmvvillmmi*ikli*nqlllqkilqqqqqlqqqlqqvnqklldlnlmkiq*llkiyqkh
sqisliisgqnql---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG322 (SHG322Q) /CSM/SH/SHG3-A/SHG322Q.Seq.d/                        862   0.0
CFF246 (CFF246Q) /CSM/CF/CFF2-B/CFF246Q.Seq.d/                        862   0.0
CFG704 (CFG704Q) /CSM/CF/CFG7-A/CFG704Q.Seq.d/                        848   0.0
CHR274 (CHR274Q) /CSM/CH/CHR2-D/CHR274Q.Seq.d/                        728   0.0
CHJ854 (CHJ854Q) /CSM/CH/CHJ8-C/CHJ854Q.Seq.d/                        728   0.0
CFH544 (CFH544Q) /CSM/CF/CFH5-B/CFH544Q.Seq.d/                        700   0.0
SLC336 (SLC336Q) /CSM/SL/SLC3-B/SLC336Q.Seq.d/                        666   0.0
AFO132 (AFO132Q) /CSM/AF/AFO1-B/AFO132Q.Seq.d/                        486   e-136
AFB548 (AFB548Q) /CSM/AF/AFB5-B/AFB548Q.Seq.d/                        434   e-121
AFK642 (AFK642Q) /CSM/AF/AFK6-B/AFK642Q.Seq.d/                        420   e-116

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   5e-14  21
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   8e-13  22
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    42   4e-11  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   2e-10  18
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   5e-10  14
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    44   1e-09  16
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   3e-09  16
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   7e-09  23
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    36   4e-08  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   8e-08  23

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 402,253,548

 psg: 0.75  gvh: 0.34  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFF246 is cyt

>CFF246F.Seq
TATTGATGAATTGGCAATTGCATTAAGAGATAAACATAAATTAGAGAATAATAAAAGTAG
TGGTGGTAGTAATAATAATTTTAAAAAATCAAATAGTAATGAAACTGATGGTAATAATAG
TGTAAATATAACAAAAGATGGTCATAATTCAGTTTCACCATTAACAAAAACAACAAGAGC
AACTGAAAATACATTAAATAGTAGTAGTGGTAATGTAAATAATACAAATACTGATGGTAC
TGATGGTGGTGTAAATAATACAAATACAAATACTGATAGTGGTACAGAACCACCTCCACC
ACAAATCTCTGAAGAACCAAATGTACCAAAAGAAGTATTATGGAGGGATGAAGATGTTAC
TTCTGATGGTAGTGATATTGCTGATGATGATTTAGATAAAATTGATTTAGAATCAGTTAC
TTCTCCAGAAAATACTACAACAACAACAACAACTACAACAACAACTACAACAAGTGAACC
AAAAATTATTAGACCTGAATTTGATGAAAATTCAATAACTTTTGAAAATTTATCAGAAAC
ACTCTCAAATTTCATTGATAATTTCGGGTCAGAATCAACTAAA----------