>CFF211 (CFF211Q) /CSM/CF/CFF2-A/CFF211Q.Seq.d/
AACAGCTAATTTAGAACTGTGACGATCACCGGGAATCCAACTGTTTAATTAAAACAAAGC
ATTGCGATAAGCTTAAAAGCTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTC
AAAGTGAAGAGATTCAACCTAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAG
GTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATCAATGAGATTCCCA
CTGTCCCTAACTACTATACAGCGAAACCACTGCAAGGGGAACGGGCCTTGCAAAAACAGC
GGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGATATTGCATAGTGACCTAAAAGG
TGTAGAATAGGTGGGAGGGGCAACCCGACGGTGAAATACCACCCCTTTTGGCGTTACTTT
GCTAACTTGGAATAACAGTACCTCATAATTCATTTTATGATGGTTTTGGTGAATAAGCGG
ATCAACCACGGGTGAAATCTGTGCAAATTGGGCAACTGATTTGTATAGCAAAGTAGTCCC
TCTGGTCCCGTATTATGTCGACCXXXXXXXXXXCNCCCNCTAACAANGAACGTNAGCTGG
GTTTANACCGTNGTNANACANGTTAGTTTTACCCTACTGTTGTCAATTGTTTGNGTAATA
GTAGCATGATTTAGTACGANAGGAACTGTCATGCCGGATCNCTGGTCTGTANGTTTATTT
GACAAAANANTGACCTGCCGCTACCATCCGTTGGATAANGGCTGAACGCCTTTAAGTCAN
AATCCNTTNTANAAACGCAAACCAAATGCTTTANAGTGTGAATGTTGTAGGTAACATTAG
GTTGTTGGTGGGGGACCCCNTTCAACTTTAAACCANATGATTAATCGCTGNTACNCTGCA
GTTTCCNTCCGGNTANTGTGGTGGGTGGCTAAATTCTAATTTAAANCCNCGNTCCGCTCA
GCNCTTCGATTGNANACGACNANCNAATGAACTAGGNGCTGNAAGCNTCCNAGNAGCGTT
CAGTTACNAGGGGTTNAGGCNTTTCCNTTAGNTCTTAAAAAAAAAAAATAAAATAAATAA
AAAGAACACTTCATATTAATTGTAAACTATAAAAATATATTATTTCCTCAAAAAT

tanlel*rspgiqlfn*nkalr*a*klltqcdfcpvl*msk*rdst*hg*tagvtmtllr
*pnasssn**ra*mdq*dshcp*llysettargtglaktagkedpveldsslilhsdlkg
ve*vggatrr*nttpfgvtlltwnnsts*fil*wfw*ISGSTTGEICANWATDLYSKVVP
LVPYYVD---

---XPLTXNVSWVXTVVXXVSFTLLLSIVXVIVA*fstxgtvmpdxwsvxlfdkxxtcry
hpldxg*tplsxnpxxkrkpnalxceccr*h*vvgggpxstlnxminrxyxavsxrxxww
vakf*fkxxxrsalrlxttxx*trxxkxpxsvqlxgvxafplxlkkkk*nk*kehfiliv
nyknilfpqk

Frame A:
ns*frtvtitgnptv*lkqsiaislkafdam*flpsalnvkvkrfnlarvnggsnydslk
vakclvi*lvtrmngsmrfplslttiqrnhckgngpcknsgerrpc*a*l*sdia**pkr
criggrgnptvkyhpfwryfanle*qyliihfmmvlvnkrinhg*nlcklgn*fv*qssp
sgpvlcr---

---XPLTXNVSWVXTVVXXVSFTLLLSIVXVIVA*fstxgtvmpdxwsvxlfdkxxtcry
hpldxg*tplsxnpxxkrkpnalxceccr*h*vvgggpxstlnxminrxyxavsxrxxww
vakf*fkxxxrsalrlxttxx*trxxkxpxsvqlxgvxafplxlkkkk*nk*kehfiliv
nyknilfpqk

Frame B:
tanlel*rspgiqlfn*nkalr*a*klltqcdfcpvl*msk*rdst*hg*tagvtmtllr
*pnasssn**ra*mdq*dshcp*llysettargtglaktagkedpveldsslilhsdlkg
ve*vggatrr*nttpfgvtlltwnnsts*fil*wfw*ISGSTTGEICANWATDLYSKVVP
LVPYYVD---

---xx*qxtxagfxpxxxxlvlpyccqlfx***hdlvrxelscrixglxvyltkx*paat
irwixaerl*vxixxxnanqmlxsvnvvgnirllvgdpxql*tx*liaxtlqfpsgxcgg
wlnsnlxprsaqxfdxxrxxnelgaxsxxxafsyxgxrxfx*xlkkknkinkkntsy*l*
tikiyyflkn

Frame C:
qli*ncddhresncliktkhcdklksf*rnvisaqcsecqseeiqpstgkrre*l*ls*g
sqmprhlisdahewineiptvpnyytakplqgeralqkqrgkktllsltlv*ycivt*kv
*nrwegqpdgeippllallc*lgitvphnsfydgfge*adqprvksvqigqliciak*sl
wsrimst---

---pxnxerxlglxrxxtx*fyptvvnclxnssmi*yxrnchagslvcxfi*qxxdlplp
svg*xlnafksxsxxxtqtkcfxv*ml*vtlgcwwgtpfnfkpxd*slxxcsfxpxxvvg
g*ili*xxxplsxsixxdxxmn*xlxasxxrsvtrgxgxsxxs*kkkik*ikrtlhinck
l*kyiissk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF211 (CFF211Q) /CSM/CF/CFF2-A/CFF211Q.Seq.d/                       1754   0.0
SFE396 (SFE396Q) /CSM/SF/SFE3-D/SFE396Q.Seq.d/                       1116   0.0
CFI647 (CFI647Q) /CSM/CF/CFI6-B/CFI647Q.Seq.d/                       1116   0.0
SFE194 (SFE194Q) /CSM/SF/SFE1-D/SFE194Q.Seq.d/                       1114   0.0
VHJ888 (VHJ888Q) /CSM/VH/VHJ8-D/VHJ888Q.Seq.d/                       1110   0.0
VHO436 (VHO436Q) /CSM/VH/VHO4-B/VHO436Q.Seq.d/                       1108   0.0
VHF415 (VHF415Q) /CSM/VH/VHF4-A/VHF415Q.Seq.d/                       1088   0.0
VFO321 (VFO321Q) /CSM/VF/VFO3-A/VFO321Q.Seq.d/                       1074   0.0
VFN831 (VFN831Q) /CSM/VF/VFN8-B/VFN831Q.Seq.d/                       1049   0.0
SFG793 (SFG793Q) /CSM/SF/SFG7-D/SFG793Q.Seq.d/                       1041   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1116   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1108   0.0    1
AC136838|AC136838.17 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 9 unordered pieces.   375   0.0    7
AC121240|AC121240.18 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 unordered pieces.   375   0.0    7
AL158197|AL158197.26 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-368H14.   363   e-177  9
AF419983|AF419983.1 Closterium calosporum var. calosporum 26S ribosomal RNA gene, partial sequence.   406   e-138  5
AF419986|AF419986.1 Closterium spinosporum var. malaysiense 26S ribosomal RNA gene, partial sequence.   406   e-137  5
AF419988|AF419988.1 Closterium spinosporum var. ryukyuense 26S ribosomal RNA gene and intergenic spacer, partial sequence.   406   e-137  5
AF419994|AF419994.1 Closterium calosporum var. galiciense 26S ribosomal RNA gene, partial sequence.   406   e-134  4
AF419996|AF419996.1 Closterium calosporum var. himalayense 26S ribosomal RNA gene, partial sequence.   406   e-134  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T02955(T02955)probable cytochrome P450 monooxygenase - maize (fr...    92   4e-17
EF676655_1(EF676655|pid:none) Picea sitchensis clone WS02746_H02...    89   4e-16
EU958272_1(EU958272|pid:none) Zea mays clone 1682540 hypothetica...    86   3e-15
BC142849_1(BC142849|pid:none) Danio rerio zgc:165536, mRNA (cDNA...    85   4e-15
AL844509_689(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    84   7e-15
CP000497_643(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    84   1e-14
AB182926_1(AB182926|pid:none) Citrullus lanatus mRNA for cytochr...    84   1e-14
BT065866_1(BT065866|pid:none) Zea mays full-length cDNA clone ZM...    82   3e-14
AY811859_1(AY811859|pid:none) Schistosoma japonicum clone SJCHGC...    57   1e-06
DQ875275_1(DQ875275|pid:none) Helicoverpa armigera cytochrome P4...    55   4e-06

 psg: 0.75  gvh: 0.55  alm: 0.23  top: 0.60  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.26  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CFF211 is nuc

>CFF211F.Seq
AACAGCTAATTTAGAACTGTGACGATCACCGGGAATCCAACTGTTTAATTAAAACAAAGC
ATTGCGATAAGCTTAAAAGCTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTC
AAAGTGAAGAGATTCAACCTAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAG
GTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATCAATGAGATTCCCA
CTGTCCCTAACTACTATACAGCGAAACCACTGCAAGGGGAACGGGCCTTGCAAAAACAGC
GGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGATATTGCATAGTGACCTAAAAGG
TGTAGAATAGGTGGGAGGGGCAACCCGACGGTGAAATACCACCCCTTTTGGCGTTACTTT
GCTAACTTGGAATAACAGTACCTCATAATTCATTTTATGATGGTTTTGGTGAATAAGCGG
ATCAACCACGGGTGAAATCTGTGCAAATTGGGCAACTGATTTGTATAGCAAAGTAGTCCC
TCTGGTCCCGTATTATGTCGACC----------

>CFF211Z.Seq
----------CNCCCNCTAACAANGAACGTNAGCTGGGTTTANACCGTNGTNANACANGT
TAGTTTTACCCTACTGTTGTCAATTGTTTGNGTAATAGTAGCATGATTTAGTACGANAGG
AACTGTCATGCCGGATCNCTGGTCTGTANGTTTATTTGACAAAANANTGACCTGCCGCTA
CCATCCGTTGGATAANGGCTGAACGCCTTTAAGTCANAATCCNTTNTANAAACGCAAACC
AAATGCTTTANAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCCCNTTC
AACTTTAAACCANATGATTAATCGCTGNTACNCTGCAGTTTCCNTCCGGNTANTGTGGTG
GGTGGCTAAATTCTAATTTAAANCCNCGNTCCGCTCAGCNCTTCGATTGNANACGACNAN
CNAATGAACTAGGNGCTGNAAGCNTCCNAGNAGCGTTCAGTTACNAGGGGTTNAGGCNTT
TCCNTTAGNTCTTAAAAAAAAAAAATAAAATAAATAAAAAGAACACTTCATATTAATTGT
AAACTATAAAAATATATTATTTCCTCAAAAAT

>CFF211P.Seq
AACAGCTAATTTAGAACTGTGACGATCACCGGGAATCCAACTGTTTAATTAAAACAAAGC
ATTGCGATAAGCTTAAAAGCTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTC
AAAGTGAAGAGATTCAACCTAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAG
GTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATCAATGAGATTCCCA
CTGTCCCTAACTACTATACAGCGAAACCACTGCAAGGGGAACGGGCCTTGCAAAAACAGC
GGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGATATTGCATAGTGACCTAAAAGG
TGTAGAATAGGTGGGAGGGGCAACCCGACGGTGAAATACCACCCCTTTTGGCGTTACTTT
GCTAACTTGGAATAACAGTACCTCATAATTCATTTTATGATGGTTTTGGTGAATAAGCGG
ATCAACCACGGGTGAAATCTGTGCAAATTGGGCAACTGATTTGTATAGCAAAGTAGTCCC
TCTGGTCCCGTATTATGTCGACC----------CNCCCNCTAACAANGAACGTNAGCTGG
GTTTANACCGTNGTNANACANGTTAGTTTTACCCTACTGTTGTCAATTGTTTGNGTAATA
GTAGCATGATTTAGTACGANAGGAACTGTCATGCCGGATCNCTGGTCTGTANGTTTATTT
GACAAAANANTGACCTGCCGCTACCATCCGTTGGATAANGGCTGAACGCCTTTAAGTCAN
AATCCNTTNTANAAACGCAAACCAAATGCTTTANAGTGTGAATGTTGTAGGTAACATTAG
GTTGTTGGTGGGGGACCCCNTTCAACTTTAAACCANATGATTAATCGCTGNTACNCTGCA
GTTTCCNTCCGGNTANTGTGGTGGGTGGCTAAATTCTAATTTAAANCCNCGNTCCGCTCA
GCNCTTCGATTGNANACGACNANCNAATGAACTAGGNGCTGNAAGCNTCCNAGNAGCGTT
CAGTTACNAGGGGTTNAGGCNTTTCCNTTAGNTCTTAAAAAAAAAAAATAAAATAAATAA
AAAGAACACTTCATATTAATTGTAAACTATAAAAATATATTATTTCCTCAAAAAT