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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF207
Library CF
(Link to library)
Clone ID CFF207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFF207P
(Link to Original site)
Representative DNA sequence 
>CFF207 (CFF207Q) /CSM/CF/CFF2-A/CFF207Q.Seq.d/
ATTTTTTNAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATA
TTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAATTTNAAAANTCNCNTTTTTTGAA
AAAAAAAAXXXXXXXXXXTTNAGAATGTAAAACCAAAGNTNCAAGATAAGAAGGTTTTCC
NCCANATCAACAACGTTTCTTTTCGNTGGGTAACCATTANAANATGGTCGNACTCTCTCT
GATTCCAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGNTGGTATG
CAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGAT
AATATTGAAAATGTTAAANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATT
CAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTC
AAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAAT
GTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTC
GCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACT
GGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAA
ATTCAAGACAAATAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifxnsfllyky*ihilffyil*HFIKKKKKKKIXKXXFFEKK---

---XNVKPKXQDKKVFXXINNVSFRWVTIXXWSXSL*fqypkrinsplgpqikxwyanlc
qninw*dhhs*s*glr*y*kc*xkdsrqrryptrptkinfrw*tirrwsysl*lqhskgi
hspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*t
iggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrq
i
Translated Amino Acid sequence (All Frames) 
Frame A:
ifxnsfllyky*ihilffyil*HFIKKKKKKKIXKXXFFEKK---

---xrm*nqxxkirrfsxxsttflfxg*plxxgrtlsdsniqkestlhlvlrlrxgmqif
vktltgktitlevegsdnienvkxkiqdkegippdqqrlifagkqledgrtlsdyniqke
stlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagk
qledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqd
k*

Frame B:
ffxihfyytnikfifyffiycnis*kkkkkkkfxxsxflkkk---

---xecktkxxr*egfppxqqrffsxgnhxxmvxlslipiskknqlstwssd*exvcksl
skh*lvrpsllklraqiilkmlxqrfktkkvshqtnkd*fslvnn*kmvvlslittfkrn
plsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvn
nwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfkt
nn

Frame C:
fxkfifiiqilnsyfiflyivtfhkkkkkkknxkxxxf*kkk---

---XNVKPKXQDKKVFXXINNVSFRWVTIXXWSXSL*fqypkrinsplgpqikxwyanlc
qninw*dhhs*s*glr*y*kc*xkdsrqrryptrptkinfrw*tirrwsysl*lqhskgi
hspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*t
iggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrq
i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF207 (CFF207Q) /CSM/CF/CFF2-A/CFF207Q.Seq.d/                       1358   0.0
SFD786 (SFD786Q) /CSM/SF/SFD7-D/SFD786Q.Seq.d/                       1289   0.0
AFC682 (AFC682Q) /CSM/AF/AFC6-D/AFC682Q.Seq.d/                       1283   0.0
SFJ461 (SFJ461Q) /CSM/SF/SFJ4-C/SFJ461Q.Seq.d/                       1281   0.0
CFJ824 (CFJ824Q) /CSM/CF/CFJ8-A/CFJ824Q.Seq.d/                       1281   0.0
CFB891 (CFB891Q) /CSM/CF/CFB8-D/CFB891Q.Seq.d/                       1279   0.0
CFJ521 (CFJ521Q) /CSM/CF/CFJ5-A/CFJ521Q.Seq.d/                       1277   0.0
CFJ412 (CFJ412Q) /CSM/CF/CFJ4-A/CFJ412Q.Seq.d/                       1277   0.0
CFF287 (CFF287Q) /CSM/CF/CFF2-D/CFF287Q.Seq.d/                       1275   0.0
CFF257 (CFF257Q) /CSM/CF/CFF2-C/CFF257Q.Seq.d/                       1275   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1219   0.0    3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1203   0.0    3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1203   0.0    3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   696   0.0    2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   658   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   646   0.0    2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   577   e-165  2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   577   e-165  2
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.   176   2e-96  5
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   186   2e-95  5
dna update 2004. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   402   e-111
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   402   e-111
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   402   e-111
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   400   e-110
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   387   e-106
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   387   e-106
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   387   e-106
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   387   e-106
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   387   e-106
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   385   e-106
protein update 2009. 5.13
PSORT 

 psg: 0.69  gvh: 0.40  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFF207 is nuc
5' end seq. ID CFF207F
5' end seq. 
>CFF207F.Seq
ATTTTTTNAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATA
TTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAATTTNAAAANTCNCNTTTTTTGAA
AAAAAAAA----------
Length of 5' end seq. 128
3' end seq. ID CFF207Z
3' end seq. 
>CFF207Z.Seq
----------TTNAGAATGTAAAACCAAAGNTNCAAGATAAGAAGGTTTTCCNCCANATC
AACAACGTTTCTTTTCGNTGGGTAACCATTANAANATGGTCGNACTCTCTCTGATTCCAA
TATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGNTGGTATGCAAATCTT
TGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGA
AAATGTTAAANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAAT
TTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGA
ATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCT
CACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGC
CAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAA
ACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCA
TTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAAC
CATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGA
CAAATAAC
Length of 3' end seq. 718
Connected seq. ID CFF207P
Connected seq. 
>CFF207P.Seq
ATTTTTTNAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATA
TTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAATTTNAAAANTCNCNTTTTTTGAA
AAAAAAAA----------TTNAGAATGTAAAACCAAAGNTNCAAGATAAGAAGGTTTTCC
NCCANATCAACAACGTTTCTTTTCGNTGGGTAACCATTANAANATGGTCGNACTCTCTCT
GATTCCAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGNTGGTATG
CAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGAT
AATATTGAAAATGTTAAANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATT
CAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTC
AAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAAT
GTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTC
GCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACT
GGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAA
ATTCAAGACAAATAAC
Length of connected seq. 846
Full length Seq ID -
Full length Seq. -
Length of full length seq. -