CFF185
Library CF
(Link to library)
Clone ID CFF185
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12597-1
Original site URL
Representative seq. ID CFF185F
(Link to Original site)
Representative DNA sequence
>CFF185 (CFF185Q) /CSM/CF/CFF1-D/CFF185Q.Seq.d/
TTATATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAGGGGCN
NTTTTTTTTNNAAAAAAAAAAAAAAAAANGGGGTTTTTNNNTTTTTTNNCCCCCCCCCCC
CCNNAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
LYKFGKKKKKKKKKKKXKGAXFFXKKKKKXGFXXFXXPPPPXK---


Translated Amino Acid sequence (All Frames)
Frame A:
LYKFGKKKKKKKKKKKXKGAXFFXKKKKKXGFXXFXXPPPPXK---


Frame B:
yislekkkkkkkkkkxkkgxffxxkkkkkxgfxxfxppppxkk---


Frame C:
i*vwkkkkkkkkkkkxkrgxffxkkkkkxgvfxffxppppxkk---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 285
Number of Sequences: 97611
Number of extensions: 285
Number of successful extensions: 97
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 0
length of query: 142
length of database: 80,480,566
effective HSP length: 17
effective length of query: 125
effective length of database: 78,821,179
effective search space: 9852647375
effective search space used: 9852647375
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 106,127
Number of Sequences: 31773983
Number of extensions: 106127
Number of successful extensions: 26439
Number of sequences better than 10.0: 0
length of query: 142
length of database: U,076,595,219
effective HSP length: 21
effective length of query: 121
effective length of database: T,409,341,576
effective search space: 4405530330696
effective search space used: 4405530330696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004. 1.28
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 117,200,604
protein update 2009. 5.13
PSORT

psg: 0.22 gvh: 0.10 alm: 0.69 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 1.17 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: cytoplasmic

>> prediction for CFF185 is nuc

5' end seq. ID CFF185F
5' end seq.
>CFF185F.Seq
TTATATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAGGGGCN
NTTTTTTTTNNAAAAAAAAAAAAAAAAANGGGGTTTTTNNNTTTTTTNNCCCCCCCCCCC
CCNNAAAAAAAA----------
Length of 5' end seq. 132
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -