CFF179
Library CF
(Link to library)
Clone ID CFF179
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14022-1
Original site URL
Representative seq. ID CFF179Z
(Link to Original site)
Representative DNA sequence
>CFF179 (CFF179Q) /CSM/CF/CFF1-D/CFF179Q.Seq.d/
XXXXXXXXXXTAAAAAGAAGAATGAGTCATCAAAAGGTGTAACAAAAACTCATAAAGTTG
ATGATCCAAAAGTATTATCAACAAAATCTTCAACTTTGGCAGCTACTTCCACAAGTAGAC
AATCTACATTACCAAAAACAACTATTACATCACCAATCAATTCATCCTTTTCAAAGAAAT
CGCCAACTTTATCCACAACTGAAATTGATAGTAAATGGAAAGCAAAAATTGAGTCAATAA
AATCAAAAACAACCACTGCATCACCAACAACAACATCAACAAAAACTTCACCAACAACAA
CAACAAAAACAAAAACATCTCCAACAACAAATACATCACCAGTTTTAAAAAGTTCAACTG
GTTTAATTTCAACCCCTCGTGTNNTAATGNNAAGATC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---KKKNESSKGVTKTHKVDDPKVLSTKSSTLAATSTSRQSTLPKTTITSPINSSFSKKS
PTLSTTEIDSKWKAKIESIKSKTTTASPTTTSTKTSPTTTTKTKTSPTTNTSPVLKSSTG
LISTPRVXMXR


Translated Amino Acid sequence (All Frames)
Frame A:
---KKKNESSKGVTKTHKVDDPKVLSTKSSTLAATSTSRQSTLPKTTITSPINSSFSKKS
PTLSTTEIDSKWKAKIESIKSKTTTASPTTTSTKTSPTTTTKTKTSPTTNTSPVLKSSTG
LISTPRVXMXR


Frame B:
---krrmshqkv*qkliklmiqkyyqqnlqlwqllpqvdnlhyqkqllhhqsihpfqrnr
qlypqlklivngkqklsq*nqkqplhhqqqhqqklhqqqqqkqkhlqqqihhqf*kvqlv
*fqplvx*xxd


Frame C:
---kee*vikrcnkns*s**sksiinkifnfgsyfhk*tiyitknnyyitnqfilfkeia
nfihn*n***meskn*vnkiknnhcitnnninknftnnnnknknisnnkyitsfkkfnwf
nfnpscxnxki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFF179 (CFF179Q) /CSM/CF/CFF1-D/CFF179Q.Seq.d/ 504 e-142
VHC104 (VHC104Q) /CSM/VH/VHC1-A/VHC104Q.Seq.d/ 206 2e-52
VSI578 (VSI578Q) /CSM/VS/VSI5-D/VSI578Q.Seq.d/ 107 1e-22
AHC580 (AHC580Q) /CSM/AH/AHC5-D/AHC580Q.Seq.d/ 107 1e-22
AHC572 (AHC572Q) /CSM/AH/AHC5-C/AHC572Q.Seq.d/ 107 1e-22
AHM680 (AHM680Q) /CSM/AH/AHM6-D/AHM680Q.Seq.d/ 52 6e-06
VSJ276 (VSJ276Q) /CSM/VS/VSJ2-D/VSJ276Q.Seq.d/ 38 0.097
VFJ634 (VFJ634Q) /CSM/VF/VFJ6-B/VFJ634Q.Seq.d/ 38 0.097
SLK291 (SLK291Q) /CSM/SL/SLK2-D/SLK291Q.Seq.d/ 38 0.097
SLE631 (SLE631Q) /CSM/SL/SLE6-B/SLE631Q.Seq.d/ 38 0.097

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL133249|AL133249.1 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 358K12 of library RPCI-11 from chromosome 2 of Homo sapiens (Human). 38 0.004 4
AC139190|AC139190.1 Pan troglodytes BAC clone RP43-12I19 from Y, complete sequence. 44 0.037 4
BX887765|BX887765.1 AGENAE Rainbow trout multi-tissues-normalized + 2 subtractions (tcbk) clone tcbk0049c.g.04, 5prim end (M13R primer). 48 0.092 1
AC022481|AC022481.5 Homo sapiens chromosome 2 clone RP11-437L5, WORKING DRAFT SEQUENCE, 14 unordered pieces. 38 0.17 3
AC012168|AC012168.10 Homo sapiens chromosome 10 clone RP11-79I23, complete sequence. 36 0.28 6
AC022853|AC022853.4 Homo sapiens chromosome 11 clone RP11-304B20 map 11, WORKING DRAFT SEQUENCE, 3 unordered pieces. 38 0.28 2
BH132227|BH132227.1 ENTMY08TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 0.37 1
AZ667953|AZ667953.1 ENTKP96TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 0.37 1
AC101805|AC101805.3 Mus musculus clone RP24-234E15, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 38 0.62 3
AC009233|AC009233.3 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence. 34 1.1 7
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

T46430(T46430)hypothetical protein DKFZp434C0826.1 - human (frag... 34 1.7
CP000414_1911(CP000414|pid:none) Leuconostoc mesenteroides subsp... 32 5.0
AE014296_728(AE014296|pid:none) Drosophila melanogaster chromoso... 32 8.6

protein update 2009. 5.13
PSORT

psg: 0.63 gvh: 0.48 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for CFF179 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFF179Z
3' end seq.
>CFF179Z.Seq
----------TAAAAAGAAGAATGAGTCATCAAAAGGTGTAACAAAAACTCATAAAGTTG
ATGATCCAAAAGTATTATCAACAAAATCTTCAACTTTGGCAGCTACTTCCACAAGTAGAC
AATCTACATTACCAAAAACAACTATTACATCACCAATCAATTCATCCTTTTCAAAGAAAT
CGCCAACTTTATCCACAACTGAAATTGATAGTAAATGGAAAGCAAAAATTGAGTCAATAA
AATCAAAAACAACCACTGCATCACCAACAACAACATCAACAAAAACTTCACCAACAACAA
CAACAAAAACAAAAACATCTCCAACAACAAATACATCACCAGTTTTAAAAAGTTCAACTG
GTTTAATTTCAACCCCTCGTGTNNTAATGNNAAGATC
Length of 3' end seq. 387
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -