CFF170 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFF170
Library	CF (Link to library)
Clone ID	CFF170 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13962-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFF1-C/CFF170Q.Seq.d/
Representative seq. ID	CFF170E (Link to Original site)
Representative DNA sequence	>CFF170 (CFF170Q) /CSM/CF/CFF1-C/CFF170Q.Seq.d/ AATTCAAAAACACCACTAAATACATTCACGTATATACGTATATATATAATATTTATAAAA AACAACAAACAAATCATAAATACACACACACAAACACACACAGATATCATATAAATATAA AATGAAGCGTATACATTTTGTGTTTGTTATACTTGGTTTACTTTGGATATCTGGTATTGC ACTTTATATGTCAAGTCGTCAAAAAGTTGAACAAAGTATTCAAGAGGAGCAAACTAAACC AATACAAGGTACAAGAACAGATAAAAAGAAATTACATTGCGACTACATTGATATGGTTTA TACATGGGTAAATGGTTCCGATCCAAAACATATTGATTCAAGAACAATGAGATCAGGTAA TACAAGACATTCATCACCAGGTAATAATAGATATAGAGATTTAATGGGTTTAAAATATTC ATTAAGAAGTATTAAAAAATTTGCACCATGGATTAAAAATGTTTGGGTTGTTTCAGCTTC ACAATATCCAACTTGGTTCGATCCATCTTCTGATGAAGTTAAATTCATTTTCCATGAAGA TTATTATTCAAATCAAGATGATTTACCAACATTTAATTCAAATTCAATTGAAAGTAATTT TTATTCATTACCAAAAGAAGTTTCAGATTGTTTTATTTATTTTAATGATGATATTTTCTT TGGAGCACCAGTGTCGGTGTCAGATTTTTGGGATTCAGATGCAGGTCAAGCAATTTATAA GAGTAGTTGGACAGCACCACAAAGTAAAGAGAAACAATCGAATATCTGGCATGCATGTAT TGCCTATACCAATGATTTATTGAACAATATTTGGGAGGTTGATAATAAGAATCGTCATTA TGCATCACATGGTCATCAATTCTTTACTCGTGAGATCTTTGATCGTATGTATCAAGATTT GGAACCAGAGTTTAAGAAAACCTCTGCCAATCCATTCCGTACAGCTCACGACCTTCAAAT TCCTTTCCTTTATTTGGCTTATGTAACTCGTTTCTATGCTACTTATGAACCAACTCCAAT CAATTATTACGCTTTGATCATGGATGATCACGAGAAAATGAAAAAAGAATTTGCAAAGAT TTTAGCAAAGAAACCAAAGACTGTTTGTTTAAATGATGGTCTCTCTCCTGATAAACCAAA TACTAAGGTCGTTGATGAATTAGAGAAATTCTTTGAAACTTATCTTCCAGAACGTGGTTC ATGGGAAAAATCAAATTAATTAATACTACTCTCTCATCTCTCACTCAATAACACTCAAAT ATTTAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	iqkhhihsriyvyiylkttnksIHTHKHTQISYKYKMKRIHFVFVILGLLWISGIA LYMSSRQKVEQSIQEEQTKPIQGTRTDKKKLHCDYIDMVYTWVNGSDPKHIDSRTMRSGN TRHSSPGNNRYRDLMGLKYSLRSIKKFAPWIKNVWVVSASQYPTWFDPSSDEVKFIFHED YYSNQDDLPTFNSNSIESNFYSLPKEVSDCFIYFNDDIFFGAPVSVSDFWDSDAGQAIYK SSWTAPQSKEKQSNIWHACIAYTNDLLNNIWEVDNKNRHYASHGHQFFTREIFDRMYQDL EPEFKKTSANPFRTAHDLQIPFLYLAYVTRFYATYEPTPINYYALIMDDHEKMKKEFAKI LAKKPKTVCLNDGLSPDKPNTKVVDELEKFFETYLPERGSWEKSN*lillshlslnntqi fk
Translated Amino Acid sequence (All Frames)	Frame A: nsktplntftyiriyiifiknnkqiinthtqthtdiiineaytfcvcytwftldiwyc tlyvksskstkysrgantntryknrkeitlrlhyglymgkwfrsktyfknneir yktfitr**irfngfkifikkykictmdkclgcfsftisnlvrsif*sihfpr llfksrftnifkfnkflfitkrsfrlfylf*yflwstsvgvrflgfrcrssnl eldsttkretieylacmyclyqfieqylgg*esslcitwssilysdlsyvsrf gtrvenlcqsipyssrpsnsfplfglcnsflcyltnsnqllrfdhgsrenekrickd fsketkdclfkwslstkygr*ireilnlssrtwfmgkiklinttlssltqhsn i Frame B: iqkhhihsriyvyiylkttnksIHTHKHTQISYKYKMKRIHFVFVILGLLWISGIA LYMSSRQKVEQSIQEEQTKPIQGTRTDKKKLHCDYIDMVYTWVNGSDPKHIDSRTMRSGN TRHSSPGNNRYRDLMGLKYSLRSIKKFAPWIKNVWVVSASQYPTWFDPSSDEVKFIFHED YYSNQDDLPTFNSNSIESNFYSLPKEVSDCFIYFNDDIFFGAPVSVSDFWDSDAGQAIYK SSWTAPQSKEKQSNIWHACIAYTNDLLNNIWEVDNKNRHYASHGHQFFTREIFDRMYQDL EPEFKKTSANPFRTAHDLQIPFLYLAYVTRFYATYEPTPINYYALIMDDHEKMKKEFAKI LAKKPKTVCLNDGLSPDKPNTKVVDELEKFFETYLPERGSWEKSNlillshlslnntqi fk Frame C: fknttkyihvytyiyniykkqqtnhkythtnthryhiniksvyilcllylvyfgylvlh ficqvvkklnkvfkrsklnqykvqeqikrnyiattliwfihgmvpiqniliqeqdqvi qdihhqviidieiwvnihevlknlhhglkmfglfqlhniqlgsihllmklnsfsmki iiqikmiyqhliqiqlkvifihyqkkfqivlfilmmifslehqcrcqifgiqmqvkqfir vvgqhhkvkrnnrisgmhvlpipmiytifgrliirivimhhmvinsllvrslivcikiw nqslrkplpihsvqlttfkflsfiwlmlvsmllmnqlqsiitlswmitrkkknlqrf qrnqrlfvmmvsllinqilrslmnrnslklifqnvvhgknqin*yyslishsitlky l
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFF170 (CFF170Q) /CSM/CF/CFF1-C/CFF170Q.Seq.d/ 2309 0.0 AFJ683 (AFJ683Q) /CSM/AF/AFJ6-D/AFJ683Q.Seq.d/ 2242 0.0 SSG232 (SSG232Q) /CSM/SS/SSG2-B/SSG232Q.Seq.d/ 1027 0.0 SFF650 (SFF650Q) /CSM/SF/SFF6-C/SFF650Q.Seq.d/ 1003 0.0 VFG707 (VFG707Q) /CSM/VF/VFG7-A/VFG707Q.Seq.d/ 948 0.0 CHE101 (CHE101Q) /CSM/CH/CHE1-A/CHE101Q.Seq.d/ 858 0.0 SSG609 (SSG609Q) /CSM/SS/SSG6-A/SSG609Q.Seq.d/ 571 e-161 VFO211 (VFO211Q) /CSM/VF/VFO2-A/VFO211Q.Seq.d/ 80 9e-14 VHG609 (VHG609Q) /CSM/VH/VHG6-A/VHG609Q.Seq.d/ 64 6e-09 SSG512 (SSG512Q) /CSM/SS/SSG5-A/SSG512Q.Seq.d/ 64 6e-09
own update	2002.11.17
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 66 1e-19 18 AC116918\|AC116918.3 Dictyostelium discoideum chromosome 2 map 6143698-6163521 strain AX4, complete sequence. 50 3e-19 7 AC117070\|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 48 5e-16 12 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 60 1e-15 19 BH162273\|BH162273.1 ENTRJ10TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 3e-08 2 BH146614\|BH146614.1 ENTPO92TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 3e-08 2 AE014833\|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 34 3e-05 16 BX072577\|BX072577.6 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone CH211-151G22. 36 4e-05 8 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 38 9e-05 18 AL929357\|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 32 2e-04 18
dna update	2003.12.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q9L1I4) RecName: Full=Exopolysaccharide phosphotransferase SCO2... 131 6e-29 (O69853) RecName: Full=Exopolysaccharide phosphotransferase SCO6... 130 1e-28 (Q50025) RecName: Full=Exopolysaccharide phosphotransferase cpsY... 129 2e-28 (O06628) RecName: Full=Exopolysaccharide phosphotransferase cpsY... 126 2e-27 (Q9L1I2) RecName: Full=Exopolysaccharide phosphotransferase SCO2... 125 3e-27 CP001341_693(CP001341\|pid:none) Arthrobacter chlorophenolicus A6... 124 9e-27 (Q714U9) RecName: Full=Capsular polysaccharide phosphotransferas... 123 2e-26 AP009493_1480(AP009493\|pid:none) Streptomyces griseus subsp. gri... 122 4e-26 AE013599_836(AE013599\|pid:none) Drosophila melanogaster chromoso... 119 2e-25 CP000454_560(CP000454\|pid:none) Arthrobacter sp. FB24, complete ... 119 3e-25
protein update	2009. 6.30
PSORT	psg: 0.63 gvh: 0.66 alm: 0.23 top: 0.13 tms: 0.07 mit: 0.37 mip: 0.08 nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.50 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 24.0 %: cytoplasmic 20.0 %: mitochondrial 20.0 %: nuclear 16.0 %: Golgi 8.0 %: endoplasmic reticulum 4.0 %: extracellular, including cell wall 4.0 %: vacuolar 4.0 %: peroxisomal >> prediction for CFF170 is cyt
5' end seq. ID	CFF170F
5' end seq.	>CFF170F.Seq AATTCAAAAACACCACTAAATACATTCACGTATATACGTATATATATAATATTTATAAAA AACAACAAACAAATCATAAATACACACACACAAACACACACAGATATCATATAAATATAA AATGAAGCGTATACATTTTGTGTTTGTTATACTTGGTTTACTTTGGATATCTGGTATTGC ACTTTATATGTCAAGTCGTCAAAAAGTTGAACAAAGTATTCAAGAGGAGCAAACTAAACC AATACAAGGTACAAGAACAGATAAAAAGAAATTACATTGCGACTACATTGATATGGTTTA TACATGGGTAAATGGTTCCGATCCAAAACATATTGATTCAAGAACAATGAGATCAGGTAA TACAAGACATTCATCACCAGGTAATAATAGATATAGAGATTTAATGGGTTTAAAATATTC ATTAAGAAGTATTAAAAAATTTGCACCATGGATTAAAAATGTTTGGGTTGTTTCAGCTTC ACAATATCCAACTTGGTTCGATCCATCTTCTGATGAAGTTAAATTCATTTTCCATGAAGA TTATTATTCAAATCAAGATGATTTACCAACATTTAATTCAAATTCAATTGAAAGTAAT-- --------
Length of 5' end seq.	598
3' end seq. ID	CFF170Z
3' end seq.	>CFF170Z.Seq ----------TGAAGATTATTATTCAAATCAAGATGATTTACCAACATTTAATTCAAATT CAATTGAAAGTAATTTTTATTCATTACCAAAAGAAGTTTCAGATTGTTTTATTTATTTTA ATGATGATATTTTCTTTGGAGCACCAGTGTCGGTGTCAGATTTTTGGGATTCAGATGCAG GTCAAGCAATTTATAAGAGTAGTTGGACAGCACCACAAAGTAAAGAGAAACAATCGAATA TCTGGCATGCATGTATTGCCTATACCAATGATTTATTGAACAATATTTGGGAGGTTGATA ATAAGAATCGTCATTATGCATCACATGGTCATCAATTCTTTACTCGTGAGATCTTTGATC GTATGTATCAAGATTTGGAACCAGAGTTTAAGAAAACCTCTGCCAATCCATTCCGTACAG CTCACGACCTTCAAATTCCTTTCCTTTATTTGGCTTATGTAACTCGTTTCTATGCTACTT ATGAACCAACTCCAATCAATTATTACGCTTTGATCATGGATGATCACGAGAAAATGAAAA AAGAATTTGCAAAGATTTTAGCAAAGAAACCAAAGACTGTTTGTTTAAATGATGGTCTCT CTCCTGATAAACCAAATACTAAGGTCGTTGATGAATTAGAGAAATTCTTTGAAACTTATC TTCCAGAACGTGGTTCATGGGAAAAATCAAATTAATTAATACTACTCTCTCATCTCTCAC TCAATAACACTCAAATATTTAAA
Length of 3' end seq.	733
Connected seq. ID	CFF170P
Connected seq.	>CFF170P.Seq AATTCAAAAACACCACTAAATACATTCACGTATATACGTATATATATAATATTTATAAAA AACAACAAACAAATCATAAATACACACACACAAACACACACAGATATCATATAAATATAA AATGAAGCGTATACATTTTGTGTTTGTTATACTTGGTTTACTTTGGATATCTGGTATTGC ACTTTATATGTCAAGTCGTCAAAAAGTTGAACAAAGTATTCAAGAGGAGCAAACTAAACC AATACAAGGTACAAGAACAGATAAAAAGAAATTACATTGCGACTACATTGATATGGTTTA TACATGGGTAAATGGTTCCGATCCAAAACATATTGATTCAAGAACAATGAGATCAGGTAA TACAAGACATTCATCACCAGGTAATAATAGATATAGAGATTTAATGGGTTTAAAATATTC ATTAAGAAGTATTAAAAAATTTGCACCATGGATTAAAAATGTTTGGGTTGTTTCAGCTTC ACAATATCCAACTTGGTTCGATCCATCTTCTGATGAAGTTAAATTCATTTTCCATGAAGA TTATTATTCAAATCAAGATGATTTACCAACATTTAATTCAAATTCAATTGAAAGTAAT-- --------TGAAGATTATTATTCAAATCAAGATGATTTACCAACATTTAATTCAAATTCA ATTGAAAGTAATTTTTATTCATTACCAAAAGAAGTTTCAGATTGTTTTATTTATTTTAAT GATGATATTTTCTTTGGAGCACCAGTGTCGGTGTCAGATTTTTGGGATTCAGATGCAGGT CAAGCAATTTATAAGAGTAGTTGGACAGCACCACAAAGTAAAGAGAAACAATCGAATATC TGGCATGCATGTATTGCCTATACCAATGATTTATTGAACAATATTTGGGAGGTTGATAAT AAGAATCGTCATTATGCATCACATGGTCATCAATTCTTTACTCGTGAGATCTTTGATCGT ATGTATCAAGATTTGGAACCAGAGTTTAAGAAAACCTCTGCCAATCCATTCCGTACAGCT CACGACCTTCAAATTCCTTTCCTTTATTTGGCTTATGTAACTCGTTTCTATGCTACTTAT GAACCAACTCCAATCAATTATTACGCTTTGATCATGGATGATCACGAGAAAATGAAAAAA GAATTTGCAAAGATTTTAGCAAAGAAACCAAAGACTGTTTGTTTAAATGATGGTCTCTCT CCTGATAAACCAAATACTAAGGTCGTTGATGAATTAGAGAAATTCTTTGAAACTTATCTT CCAGAACGTGGTTCATGGGAAAAATCAAATTAATTAATACTACTCTCTCATCTCTCACTC AATAACACTCAAATATTTAAA
Length of connected seq.	1331
Full length Seq ID	CFF170E
Full length Seq.	>CFF170E.Seq AATTCAAAAACACCACTAAATACATTCACGTATATACGTATATATATAATATTTATAAAA AACAACAAACAAATCATAAATACACACACACAAACACACACAGATATCATATAAATATAA AATGAAGCGTATACATTTTGTGTTTGTTATACTTGGTTTACTTTGGATATCTGGTATTGC ACTTTATATGTCAAGTCGTCAAAAAGTTGAACAAAGTATTCAAGAGGAGCAAACTAAACC AATACAAGGTACAAGAACAGATAAAAAGAAATTACATTGCGACTACATTGATATGGTTTA TACATGGGTAAATGGTTCCGATCCAAAACATATTGATTCAAGAACAATGAGATCAGGTAA TACAAGACATTCATCACCAGGTAATAATAGATATAGAGATTTAATGGGTTTAAAATATTC ATTAAGAAGTATTAAAAAATTTGCACCATGGATTAAAAATGTTTGGGTTGTTTCAGCTTC ACAATATCCAACTTGGTTCGATCCATCTTCTGATGAAGTTAAATTCATTTTCCATGAAGA TTATTATTCAAATCAAGATGATTTACCAACATTTAATTCAAATTCAATTGAAAGTAATTT TTATTCATTACCAAAAGAAGTTTCAGATTGTTTTATTTATTTTAATGATGATATTTTCTT TGGAGCACCAGTGTCGGTGTCAGATTTTTGGGATTCAGATGCAGGTCAAGCAATTTATAA GAGTAGTTGGACAGCACCACAAAGTAAAGAGAAACAATCGAATATCTGGCATGCATGTAT TGCCTATACCAATGATTTATTGAACAATATTTGGGAGGTTGATAATAAGAATCGTCATTA TGCATCACATGGTCATCAATTCTTTACTCGTGAGATCTTTGATCGTATGTATCAAGATTT GGAACCAGAGTTTAAGAAAACCTCTGCCAATCCATTCCGTACAGCTCACGACCTTCAAAT TCCTTTCCTTTATTTGGCTTATGTAACTCGTTTCTATGCTACTTATGAACCAACTCCAAT CAATTATTACGCTTTGATCATGGATGATCACGAGAAAATGAAAAAAGAATTTGCAAAGAT TTTAGCAAAGAAACCAAAGACTGTTTGTTTAAATGATGGTCTCTCTCCTGATAAACCAAA TACTAAGGTCGTTGATGAATTAGAGAAATTCTTTGAAACTTATCTTCCAGAACGTGGTTC ATGGGAAAAATCAAATTAATTAATACTACTCTCTCATCTCTCACTCAATAACACTCAAAT ATTTAAA
Length of full length seq.	1267

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas