CFF158
Library CF
(Link to library)
Clone ID CFF158
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFF158P
(Link to Original site)
Representative DNA sequence
>CFF158 (CFF158Q) /CSM/CF/CFF1-C/CFF158Q.Seq.d/
GTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAA
TTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAAAAA
XXXXXXXXXXGTGATGATGTCGAATGTCCANATTTCCATANATGTGTTNAAAAACGTGGT
GGTATCTTAAGTTGTGAATTTGATCCCCCAAGACAACCAANATCCCTTGATTGGGCTGAA
AAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKNQKK---

---DDVECPXFHXCVXKRGGILSCEFDPPRQPXSLDWAEN


Translated Amino Acid sequence (All Frames)
Frame A:
vvfcsysn*isiqlkkvkikfvksicnkn**fkkkkpkkk---

---vmmsnvxisixvxknvvvs*vvnlipqdnqxpliglk

Frame B:
*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKNQKK---

---**crmsxfpxmcxktwwylkl*i*spkttxip*lg*k

Frame C:
silfifklnintikks*n*ickinl*qklvi*kkktkkk---

---DDVECPXFHXCVXKRGGILSCEFDPPRQPXSLDWAEN

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFF158 (CFF158Q) /CSM/CF/CFF1-C/CFF158Q.Seq.d/ 200 7e-51
CHA309 (CHA309Q) /CSM/CH/CHA3-A/CHA309Q.Seq.d/ 188 3e-47
CFH556 (CFH556Q) /CSM/CF/CFH5-C/CFH556Q.Seq.d/ 188 3e-47
CHB150 (CHB150Q) /CSM/CH/CHB1-C/CHB150Q.Seq.d/ 186 1e-46
CFH605 (CFH605Q) /CSM/CF/CFH6-A/CFH605Q.Seq.d/ 186 1e-46
CFG252 (CFG252Q) /CSM/CF/CFG2-C/CFG252Q.Seq.d/ 186 1e-46
SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/ 184 4e-46
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/ 184 4e-46
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/ 184 4e-46
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/ 184 4e-46

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 184 1e-76 3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 184 1e-75 4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 184 2e-71 6
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 184 2e-59 2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 3e-26 2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 82 4e-12 1
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72. 40 9e-04 4
AC024960|AC024960.2 Homo sapiens chromosome 18 clone RP11-431C11 map 18, WORKING DRAFT SEQUENCE, 23 unordered pieces. 34 0.018 5
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site. 42 0.14 2
BX088711|BX088711.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-39A12. 46 0.22 1
dna update 2004. 1.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 77 2e-13

protein update 2008.12.26
PSORT

psg: 0.11 gvh: 0.43 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for CFF158 is nuc

5' end seq. ID CFF158F
5' end seq.
>CFF158F.Seq
GTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAA
TTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAAAAA
----------
Length of 5' end seq. 120
3' end seq. ID CFF158Z
3' end seq.
>CFF158Z.Seq
----------GTGATGATGTCGAATGTCCANATTTCCATANATGTGTTNAAAAACGTGGT
GGTATCTTAAGTTGTGAATTTGATCCCCCAAGACAACCAANATCCCTTGATTGGGCTGAA
AAT
Length of 3' end seq. 113
Connected seq. ID CFF158P
Connected seq.
>CFF158P.Seq
GTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAA
TTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAAAAA
----------GTGATGATGTCGAATGTCCANATTTCCATANATGTGTTNAAAAACGTGGT
GGTATCTTAAGTTGTGAATTTGATCCCCCAAGACAACCAANATCCCTTGATTGGGCTGAA
AAT
Length of connected seq. 233
Full length Seq ID -
Full length Seq. -
Length of full length seq. -