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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFF134
Library CF
(Link to library)
Clone ID CFF134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID CFF134P
(Link to Original site)
Representative DNA sequence 
>CFF134 (CFF134Q) /CSM/CF/CFF1-B/CFF134Q.Seq.d/
ATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAAC
CACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATGG
TCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAACG
TATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTAC
CTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAAC
ACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAAG
AGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCGG
TAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATAC
ACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATXXXXXXXX
XXTGAACCAGCTTGGAAAGTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTAT
CGTTTCAATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAA
ATTGGTCGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCT
GCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAA
GGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAA
ATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGT
TTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGT
GGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCT
CGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTC
ATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTC
ACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTA
GGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATNATGTCATCAAATTCGCTGCT
AGATCAAACTTGTAAATCAATATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
yfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRER
IPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSER
DPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWD---

---EPAWKVSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVE
QAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQR
DGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLY
RLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNXVIKF
AARSNL*ini
Translated Amino Acid sequence (All Frames) 
Frame A:
ifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*t
yprtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*krfirf*k
rskrfrcqily*rr*l*ygr**yssflys*sikiprfhsytkt*stnkl*rskyvlg---

---*tslesfhsidgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*srellc*s*
tsclltiphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt
*wfhgcqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi
*thv*rcqisfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c*xchqi
rc*iklvnqy

Frame B:
yfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRER
IPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSER
DPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWD---

---EPAWKVSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVE
QAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQR
DGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLY
RLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNXVIKF
AARSNL*ini

Frame C:
ilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivnv
sqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpilke
iqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfg---

---nqlgkfpfn*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqritllkln
klpshhptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnv
mvswlsmvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyi
dsclkmpnlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvlvlmlxmssns
lldqtcksi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF134 (CFF134Q) /CSM/CF/CFF1-B/CFF134Q.Seq.d/                       2399   0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/                        1465   0.0
AFG841 (AFG841Q) /CSM/AF/AFG8-B/AFG841Q.Seq.d/                       1465   0.0
AFE580 (AFE580Q) /CSM/AF/AFE5-D/AFE580Q.Seq.d/                       1465   0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/                       1451   0.0
AFE294 (AFE294Q) /CSM/AF/AFE2-D/AFE294Q.Seq.d/                       1447   0.0
AFE574 (AFE574Q) /CSM/AF/AFE5-D/AFE574Q.Seq.d/                       1445   0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/                       1437   0.0
CFI885 (CFI885Q) /CSM/CF/CFI8-D/CFI885Q.Seq.d/                       1437   0.0
CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/                       1435   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds.  1465   0.0    1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1465   0.0    13
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds.   111   3e-64  7
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing  said  catalase, and process for preparing catalase using the genetic engineering  technology.    86   7e-33  4
AP004595|AP004595.1 Oceanobacillus iheyensis genomic DNA, section 3/13.    72   1e-32  10
AX536932|AX536932.1 Sequence 533 from Patent WO02064766.          101   2e-28  2
AR375090|AR375090.1 Sequence 96 from patent US 6605709.            76   5e-28  3
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR.    76   3e-27  3
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type.    76   3e-27  3
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds.    94   6e-26  2
dna update 2004. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   507   e-142
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027...   285   2e-75
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ...   285   2e-75
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   280   6e-74
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62...   276   8e-73
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c...   276   1e-72
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...   272   2e-71
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili...   271   4e-71
(P26901) RecName: Full=Vegetative catalase;          EC=1.11.1.6...   271   5e-71
(Q9PWF7) RecName: Full=Catalase;          EC=1.11.1.6;  &AB03187...   256   9e-67
protein update 2009. 5.13
PSORT 

 psg: 0.89  gvh: 0.57  alm: 0.44  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: extracellular, including cell wall
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFF134 is nuc
5' end seq. ID CFF134F
5' end seq. 
>CFF134F.Seq
ATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAAC
CACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATGG
TCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAACG
TATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTAC
CTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAAC
ACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAAG
AGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCGG
TAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATAC
ACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGAT--------
--
Length of 5' end seq. 532
3' end seq. ID CFF134Z
3' end seq. 
>CFF134Z.Seq
----------TGAACCAGCTTGGAAAGTTTCCATTCAATTGATGGAATTTGAAGATGCCT
TAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCAT
TAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTG
AACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGA
TGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACT
ATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAAC
GTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACT
CTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTT
TCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTAT
ATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGT
CCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACA
AAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATNATGTCATCAAAT
TCGCTGCTAGATCAAACTTGTAAATCAATATA
Length of 3' end seq. 742
Connected seq. ID CFF134P
Connected seq. 
>CFF134P.Seq
ATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAAC
CACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATGG
TCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAACG
TATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTAC
CTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAAC
ACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAAG
AGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCGG
TAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATAC
ACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGAT--------
--TGAACCAGCTTGGAAAGTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTAT
CGTTTCAATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAA
ATTGGTCGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCT
GCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAA
GGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAA
ATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGT
TTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGT
GGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCT
CGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTC
ATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTC
ACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTA
GGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATNATGTCATCAAATTCGCTGCT
AGATCAAACTTGTAAATCAATATA
Length of connected seq. 1274
Full length Seq ID -
Full length Seq. -
Length of full length seq. -