>CFF115 (CFF115Q) /CSM/CF/CFF1-A/CFF115Q.Seq.d/
XXXXXXXXXXCTTCACTGAATATAGTAGACCACCAGAAGTCAAATATCCAATCCAAAACG
AACAATGCTATGCAGTGATTTTGAAATTCATAAAGGATGCTGCTAAATGGAATATCGATC
TCAACAATTTCTCATTGGTTGGCGATAGTGCCGGTGGTAATATGGCTATTGTGTTGGGGT
TGATGGCAAAAGTTAGAAATGGACCTTCGTTCAAGAGAATTTGTCTCTACTATCCAGCCA
TTGATAGCGGTATGAATTCAGGTTCCTATAAAGAATTCCATAATGATTTCTATCTTACTA
AAGATGGTATGAAATGGTTCTGGGATGCATACACCAACAGTCCAAAAGACACCAATGAAA
TCTACTGCTCTCCTTCCAAATGCAAAGAATCTGATGTCATGGGTTTCCCAGAAACAATGA
TCATCAATGGTGAAGCTGATGTCCTCCGTGATGAAGGTGAAAATTTCGCTAGACTATTAC
GTAAAGCAAATGTTCCAGTAACTCACCTAAGAATTCAAGCAATGGTTCATGATTTCGTTG
CTCTAAACTGTCTTGATCAATCAAAAGCATGTAGAGTTGCAATGGATTCCTCAATTGATT
TCTTAAATAAATCTCATGATCCAAATGCAACTAAACCAAAATGTTAAAATAATCAATCAA
TCAATCAATCAATCAATCAATCAATCAATTATAAAATAAAACACATTTAC

---FTEYSRPPEVKYPIQNEQCYAVILKFIKDAAKWNIDLNNFSLVGDSAGGNMAIVLGL
MAKVRNGPSFKRICLYYPAIDSGMNSGSYKEFHNDFYLTKDGMKWFWDAYTNSPKDTNEI
YCSPSKCKESDVMGFPETMIINGEADVLRDEGENFARLLRKANVPVTHLRIQAMVHDFVA
LNCLDQSKACRVAMDSSIDFLNKSHDPNATKPKC*nnqsinqsinqsinykikhiy

Frame A:
---FTEYSRPPEVKYPIQNEQCYAVILKFIKDAAKWNIDLNNFSLVGDSAGGNMAIVLGL
MAKVRNGPSFKRICLYYPAIDSGMNSGSYKEFHNDFYLTKDGMKWFWDAYTNSPKDTNEI
YCSPSKCKESDVMGFPETMIINGEADVLRDEGENFARLLRKANVPVTHLRIQAMVHDFVA
LNCLDQSKACRVAMDSSIDFLNKSHDPNATKPKC*nnqsinqsinqsinykikhiy


Frame B:
---slnivdhqksniqsktnnamq*f*ns*rmllngisistishwlaivpvviwllcwg*
wqklemdlrsrefvstiqpliav*iqvpiknsimisillkmv*ngsgmhtptvqktpmks
tallpnaknlmswvsqkq*ssmvklmssvmkvkisldyyvkqmfq*lt*efkqwfmisll
*tvlinqkhvelqwipqlis*inlmiqmqlnqnvkiinqsinqsinqsiik*ntf


Frame C:
---h*i**ttrsqisnpkrtmlcsdfeihkgcc*meyrsqqfligwr*crw*ygycvgvd
gks*kwtfvqenlsllssh**ryefrfl*rip**flsy*rwyemvlgcihqqskrhq*nl
llsfqmqri*chgfprnndhqw*s*cpp**r*kfr*tit*skcssnspknssngs*frcs
kls*siksm*scngfln*flk*is*skcn*tkmlk*sinqsinqsinql*nkthl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA271 (VFA271Q) /CSM/VF/VFA2-C/VFA271Q.Seq.d/                       1185   0.0
SFK642 (SFK642Q) /CSM/SF/SFK6-B/SFK642Q.Seq.d/                       1185   0.0
SFI745 (SFI745Q) /CSM/SF/SFI7-B/SFI745Q.Seq.d/                       1185   0.0
SFI225 (SFI225Q) /CSM/SF/SFI2-B/SFI225Q.Seq.d/                       1185   0.0
SFH419 (SFH419Q) /CSM/SF/SFH4-A/SFH419Q.Seq.d/                       1185   0.0
SFH139 (SFH139Q) /CSM/SF/SFH1-B/SFH139Q.Seq.d/                       1185   0.0
SFH117 (SFH117Q) /CSM/SF/SFH1-A/SFH117Q.Seq.d/                       1185   0.0
SFF348 (SFF348Q) /CSM/SF/SFF3-B/SFF348Q.Seq.d/                       1185   0.0
SFF102 (SFF102Q) /CSM/SF/SFF1-A/SFF102Q.Seq.d/                       1185   0.0
SFD221 (SFD221Q) /CSM/SF/SFD2-A/SFD221Q.Seq.d/                       1185   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC105841|AC105841.3 Rattus norvegicus clone CH230-36A21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.54   10
AC022773|AC022773.17 Mus musculus chromosome X, clone RP23-157B8, complete sequence.    46   0.68   1
AL672060|AL672060.9 Mouse DNA sequence from clone RP23-423L11 on chromosome X.    46   0.68   1
AC068287|AC068287.5 Homo sapiens BAC clone RP11-532L9 from 2, complete sequence.    46   0.68   1
AC144470|AC144470.2 Canis familiaris clone RP81-355L14, WORKING DRAFT SEQUENCE, 9 ordered pieces.    32   1.3    2
AC144605|AC144605.2 Canis familiaris clone RP81-249M20, WORKING DRAFT SEQUENCE, 5 ordered pieces.    32   1.3    2
BX908401|BX908401.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40   1.6    3
AF262040|AF262040.1 Arabidopsis thaliana BAC T10I18.               44   2.7    1
AE016969|AE016969.1 Mycoplasma gallisepticum strain R section 3 of 4 of the complete genome.    32   4.6    2
AC147498|AC147498.8 Medicago truncatula clone mth2-6f18, WORKING DRAFT SEQUENCE, 6 unordered pieces.    32   4.9    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000750_1934(CP000750|pid:none) Kineococcus radiotolerans SRS30...   185   1e-45
AP009493_770(AP009493|pid:none) Streptomyces griseus subsp. gris...   174   3e-42
AP006618_3275(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...   171   1e-41
CP001074_3223(CP001074|pid:none) Rhizobium etli CIAT 652, comple...   167   4e-40
(P14326) RecName: Full=Vegetative-specific protein H5;                167   4e-40
CP000133_3066(CP000133|pid:none) Rhizobium etli CFN 42, complete...   165   1e-39
CP001191_2811(CP001191|pid:none) Rhizobium leguminosarum bv. tri...   165   1e-39
CP000431_3066(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   163   5e-39
CR628336_1860(CR628336|pid:none) Legionella pneumophila str. Par...   162   9e-39
AM238663_1209(AM238663|pid:none) Streptomyces ambofaciens ATCC 2...   162   9e-39

 psg: 0.58  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFF115 is cyt

>CFF115Z.Seq
----------CTTCACTGAATATAGTAGACCACCAGAAGTCAAATATCCAATCCAAAACG
AACAATGCTATGCAGTGATTTTGAAATTCATAAAGGATGCTGCTAAATGGAATATCGATC
TCAACAATTTCTCATTGGTTGGCGATAGTGCCGGTGGTAATATGGCTATTGTGTTGGGGT
TGATGGCAAAAGTTAGAAATGGACCTTCGTTCAAGAGAATTTGTCTCTACTATCCAGCCA
TTGATAGCGGTATGAATTCAGGTTCCTATAAAGAATTCCATAATGATTTCTATCTTACTA
AAGATGGTATGAAATGGTTCTGGGATGCATACACCAACAGTCCAAAAGACACCAATGAAA
TCTACTGCTCTCCTTCCAAATGCAAAGAATCTGATGTCATGGGTTTCCCAGAAACAATGA
TCATCAATGGTGAAGCTGATGTCCTCCGTGATGAAGGTGAAAATTTCGCTAGACTATTAC
GTAAAGCAAATGTTCCAGTAACTCACCTAAGAATTCAAGCAATGGTTCATGATTTCGTTG
CTCTAAACTGTCTTGATCAATCAAAAGCATGTAGAGTTGCAATGGATTCCTCAATTGATT
TCTTAAATAAATCTCATGATCCAAATGCAACTAAACCAAAATGTTAAAATAATCAATCAA
TCAATCAATCAATCAATCAATCAATCAATTATAAAATAAAACACATTTAC