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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE868
Library CF
(Link to library)
Clone ID CFE868
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16477-1
Original site URL
Representative seq. ID CFE868P
(Link to Original site)
Representative DNA sequence 
>CFE868 (CFE868Q) /CSM/CF/CFE8-C/CFE868Q.Seq.d/
ATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTTTATTGATTAACCTAA
TAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTGGGCATTCTTCTGAAC
ATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAAGAAGAGATCAATCTG
AAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACGACCTTGATGATATAG
ATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGAGTGAAGATGAAGAAA
CTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTGTATGTTTGCAATGTC
AAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAAGAGGTTCACCGTAGGTCA
CATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAATTAAATAAACGTGAT
CGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAAACAACXXXXXXXXXXTG
ATCCAGTCAAGAAAATGAAACATCTCCTCAAGGAATACTTTAGTCCAAATCAATCAGAGA
GAGGTTTTTCATTGGCTTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATC
GTAAACAATATAACTATGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATA
TGTTTAAACTTTGGTACTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTAT
CAAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGC
ATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTA
TTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAA
TCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATC
CAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCA
TCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATG
CTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAAGGTCTGCTCAAATCGCAAA
GAAACCTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iyktfkqivqp*y*vy*lt**yl*q*ligyiiyflgillnipkts*rwrpklqkkeeinl
kkcqnkin*qkfwittlmi*i*kkmtqpivnlnl*VKMKKLQVCAVNVQINQLKLYVCNV
KMNFVQFVQLHSIEEVHRRSHIFKNKHGQELDYDELNKRDRQPPLHGKEDEKVQNN---

---DPVKKMKHLLKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHI
LHDMFKLWYFAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVG
SSVIHLGDHNVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTL
TKIILCDFFKHAFDGSGADNFFDAGSCIDGRLTSAWQGLLKSQRNL
Translated Amino Acid sequence (All Frames) 
Frame A:
iyktfkqivqp*y*vy*lt**yl*q*ligyiiyflgillnipkts*rwrpklqkkeeinl
kkcqnkin*qkfwittlmi*i*kkmtqpivnlnl*VKMKKLQVCAVNVQINQLKLYVCNV
KMNFVQFVQLHSIEEVHRRSHIFKNKHGQELDYDELNKRDRQPPLHGKEDEKVQNN---

---*ssqenetspqgil*sksirerffigfgtwhwwctsfsqss*ti*lcisitllvaty
ss*yv*tlvlcrn*sfmrtqisiikhwsrsksystmskrw*nya*ystsnskksw**lgw
ffrysfg*s*rsklfgfhr*ihsnl*npksnrfnh*iyskdhrskfsclhqkhlwwstnf
nqnhpl*fl*trfrw*wcr*lfrcwlly*w*infclarsaqiakkp

Frame B:
ytklsnr*fspnirfid*pnntcsnn*lgi*fifwaff*tyqkrvkggvqnfkkkkrsi*
rnvktk*inksfg*rp**yryrrr*lnqs*i*iye*r*rnsryvl*myrsts*scmfams
r*tlyslfnftp*krftvghiflkinmvknlimmn*invivnlhymakkmkkfkt---

---DPVKKMKHLLKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHI
LHDMFKLWYFAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVG
SSVIHLGDHNVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTL
TKIILCDFFKHAFDGSGADNFFDAGSCIDGRLTSAWQGLLKSQRNL

Frame C:
iqnfqtdssalilgllinliilvaiinwvynlfsghssehtknelkvasktskkrrdqse
emskqnkltkvldndlddidieeddstnrkfesmsedeetpgmccectdqpaevvclqcq
delctvcstslhrrgsp*vtyf*k*twsrt*l**ik*t*sstsitwqrr*ksskq---

---iqsrk*nissrntlvqinqrevfhwlwnmalvvhvfltiivnnitmyinhspcgnif
fmiclnfgtlqklifyadtdinyqtlvkv*ivfnnvqtlvklcivfyvklkkklvmiglv
lplfiwviitfqtlwfssintlksles*vqsf*plnifqrspiqi*lltsktplvvhkl*
pkssfvislntlsmvvvpitfsmlalvlmvd*lllgkvcsnrketl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE868 (CFE868Q) /CSM/CF/CFE8-C/CFE868Q.Seq.d/                       2242   0.0
VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/                       1269   0.0
VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/                       1269   0.0
CHQ507 (CHQ507Q) /CSM/CH/CHQ5-A/CHQ507Q.Seq.d/                       1269   0.0
VHI541 (VHI541Q) /CSM/VH/VHI5-B/VHI541Q.Seq.d/                       1267   0.0
VHC810 (VHC810Q) /CSM/VH/VHC8-A/VHC810Q.Seq.d/                       1263   0.0
CHL149 (CHL149Q) /CSM/CH/CHL1-C/CHL149Q.Seq.d/                       1257   0.0
VHL654 (VHL654Q) /CSM/VH/VHL6-C/VHL654Q.Seq.d/                       1249   0.0
CHM624 (CHM624Q) /CSM/CH/CHM6-A/CHM624Q.Seq.d/                       1245   0.0
CHP542 (CHP542Q) /CSM/CH/CHP5-B/CHP542Q.Seq.d/                       1217   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                  36   0.005  12
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    32   0.011  15
AC091873|AC091873.2 Homo sapiens chromosome 5 clone CTD-2577N22, complete sequence.    36   0.011  9
AC109452|AC109452.2 Homo sapiens chromosome 5 clone RP11-198A9, WORKING DRAFT SEQUENCE, 7 ordered pieces.    36   0.013  11
AC097767|AC097767.7 Rattus norvegicus clone CH230-11A23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   0.042  4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.051  16
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12 section 2 of 9 of the complete sequence.    34   0.059  13
AE014306|AE014306.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 3 of 11 of the complete sequence.    32   0.066  12
AC134426|AC134426.7 Mus musculus chromosome 1 clone RP24-342A12 map 1, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    50   0.075  1
AC104914|AC104914.9 Mus musculus chromosome 9, clone RP23-108E20, complete sequence.    38   0.077  10
dna update 2004. 3. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001575_110(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   273   1e-71
CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   251   4e-65
CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara...   238   4e-61
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   223   8e-57
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr...   217   6e-55
AL844507_105(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...   217   7e-55
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ...   207   6e-52
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c...   207   8e-52
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35.    206   2e-51
AM494971_416(AM494971|pid:none) Leishmania braziliensis chromoso...   204   4e-51
protein update 2009. 5.13
PSORT 

 psg: 0.81  gvh: 0.28  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  4.0 %: vacuolar

>> prediction for CFE868 is cyt
5' end seq. ID CFE868F
5' end seq. 
>CFE868F.Seq
ATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTTTATTGATTAACCTAA
TAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTGGGCATTCTTCTGAAC
ATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAAGAAGAGATCAATCTG
AAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACGACCTTGATGATATAG
ATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGAGTGAAGATGAAGAAA
CTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTGTATGTTTGCAATGTC
AAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAAGAGGTTCACCGTAGGTCA
CATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAATTAAATAAACGTGAT
CGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAAACAAC----------
Length of 5' end seq. 528
3' end seq. ID CFE868Z
3' end seq. 
>CFE868Z.Seq
----------TGATCCAGTCAAGAAAATGAAACATCTCCTCAAGGAATACTTTAGTCCAA
ATCAATCAGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCATTGGTGGTGCACGTCTTT
CTCACAATCATCGTAAACAATATAACTATGTATATCAATCACTCTCCTTGTGGCAACATA
TTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGATCTTTTATGCGGACACA
GATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTTG
GTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTTG
GTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGATA
AATACACTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCAA
AGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACTT
TAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGATA
ACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAAGGTCTGC
TCAAATCGCAAAGAAACCTTA
Length of 3' end seq. 671
Connected seq. ID CFE868P
Connected seq. 
>CFE868P.Seq
ATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTTTATTGATTAACCTAA
TAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTGGGCATTCTTCTGAAC
ATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAAGAAGAGATCAATCTG
AAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACGACCTTGATGATATAG
ATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGAGTGAAGATGAAGAAA
CTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTGTATGTTTGCAATGTC
AAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAAGAGGTTCACCGTAGGTCA
CATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATGAATTAAATAAACGTGAT
CGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAAACAAC----------TG
ATCCAGTCAAGAAAATGAAACATCTCCTCAAGGAATACTTTAGTCCAAATCAATCAGAGA
GAGGTTTTTCATTGGCTTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATC
GTAAACAATATAACTATGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATA
TGTTTAAACTTTGGTACTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTAT
CAAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGC
ATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTA
TTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAA
TCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATC
CAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCA
TCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATG
CTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAAGGTCTGCTCAAATCGCAAA
GAAACCTTA
Length of connected seq. 1199
Full length Seq ID -
Full length Seq. -
Length of full length seq. -