CFE844
Library CF
(Link to library)
Clone ID CFE844
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFE844Z
(Link to Original site)
Representative DNA sequence
>CFE844 (CFE844Q) /CSM/CF/CFE8-B/CFE844Q.Seq.d/
XXXXXXXXXXGCTCATGATACCATCATGAGAATGAAACTCTATGCTGACTCTTTAGCTCG
TTACAGTAAATCACCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATT
TGCCCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATAT
TGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATG
TGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAAT
TATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATC
ACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGT
TATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCAC
TGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAAT
TCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGA
CAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGA
TGTCATGGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---HDTIMRMKLYADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIV
FDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESL
QIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQ
EKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMV


Translated Amino Acid sequence (All Frames)
Frame A:
---lmips*e*nsmltl*lvtvnhhtfihymv*vnyhkhlpvyllsmvvhiclinqlkil
fsmkkrkllklhlkvkl*hviklfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnh
skslshknklnvnqictlvlchplivsvqrvntlpsfqpllkpmnqrkn*hqltly*vqf
krnlsiflislnqllmvlptmfssqnhmmlpltlkplvkmsw


Frame B:
---s*yhhenetlc*lfsslq*itihlsiiwfr*ittsicpficylwwyiya**tn*kyc
fr*rkeny*syi*r*ncnm**ncl*siifpk*ssker*nysfnlyfewsnsic**ei*it
pnhyptkts*tsiryvrwcyvirslclskg*ihchrfshc*nq*treristslrfirsns
reiclyf*fh*tnc*wycrqcfhlkii*cylsl*nhl*rchg


Frame C:
---HDTIMRMKLYADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIV
FDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESL
QIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQ
EKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMV


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE844 (CFE844Q) /CSM/CF/CFE8-B/CFE844Q.Seq.d/ 1308 0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/ 1304 0.0
CFJ161 (CFJ161Q) /CSM/CF/CFJ1-C/CFJ161Q.Seq.d/ 1304 0.0
AFE889 (AFE889Q) /CSM/AF/AFE8-D/AFE889Q.Seq.d/ 1304 0.0
AFD453 (AFD453Q) /CSM/AF/AFD4-C/AFD453Q.Seq.d/ 1304 0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/ 1302 0.0
CFH515 (CFH515Q) /CSM/CF/CFH5-A/CFH515Q.Seq.d/ 1292 0.0
SFL479 (SFL479Q) /CSM/SF/SFL4-D/SFL479Q.Seq.d/ 1285 0.0
AFB514 (AFB514Q) /CSM/AF/AFB5-A/AFB514Q.Seq.d/ 1283 0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/ 1275 0.0

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 54 8e-10 3
AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi). 38 1e-09 4
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 3e-08 2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 3e-08 2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 3e-08 2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 3e-08 2
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 1e-07 2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence. 62 1e-07 2
BZ296562|BZ296562.1 CG2922.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG2922, DNA sequence. 66 7e-07 1
CA283418|CA283418.1 SCSBSD1054C02.g SD1 Saccharum officinarum cDNA clone SCSBSD1054C02 5', mRNA sequence. 56 8e-07 2
dna update 2004. 3. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ... 273 2e-72
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia... 272 7e-72
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 272 7e-72
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 272 7e-72
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA. 272 7e-72
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 271 1e-71
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 271 2e-71
A54091(A54091;S35964;A37996)rab GDP dissociation inhibitor alpha... 271 2e-71
AB171705_1(AB171705|pid:none) Macaca fascicularis brain cDNA clo... 271 2e-71
AY665236_1(AY665236|pid:none) Saimiri boliviensis GDP dissociati... 271 2e-71
protein update 2009. 5.13
PSORT

psg: 0.62 gvh: 0.62 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
12.0 %: cytoskeletal
8.0 %: vesicles of secretory system

>> prediction for CFE844 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFE844Z
3' end seq.
>CFE844Z.Seq
----------GCTCATGATACCATCATGAGAATGAAACTCTATGCTGACTCTTTAGCTCG
TTACAGTAAATCACCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATT
TGCCCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATAT
TGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATG
TGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAAT
TATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATC
ACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGT
TATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCAC
TGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAAT
TCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGA
CAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGA
TGTCATGGTA
Length of 3' end seq. 660
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -