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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE812
Library CF
(Link to library)
Clone ID CFE812
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15019-1
Original site URL
Representative seq. ID CFE812P
(Link to Original site)
Representative DNA sequence 
>CFE812 (CFE812Q) /CSM/CF/CFE8-A/CFE812Q.Seq.d/
TGGGATTTTGATTTTTTTTTCTAATTTTCATTTAAACAACTAAACAGATAAATTTAAAAA
AATGGGATTCGATTTTAAATTAAAAATTTGCAAANGCATCACAATTAGTTGTGATTTCAA
AAGGNAAACCATTTTTAATTGGTAAAGAAATGAGCAATATTGAAATXXXXXXXXXXTNTG
GTGAATTGGCAGGTGAGTTGGGTTGCAGGGCAATTAGTCATNTTGANAAGGTTAGTNAAG
ATGGTATGAAGGCAATGGCTGCCACTCCAACCTTTGCTGTACTTTTACCAACCACAGCTT
ACATNTTAAGATTGGAATGTCCACCCGCTANAAGAATGATTGAATTAGGTGTACCAGTCG
CATTGGGAAGTGATTTCAATCCAAATGCTCATTGTTTATCAATGCCTTTTGTTATGAATT
TAGCGTGTGNACTCATGAAAATGAATATGAACGAATCTTTAGTTGCTGCCACCTTAAATG
CTGCTGCCTCAATCAATAAATCTTCAACTCATGGTTCACTANAAGTTGGTAAATTTGCTG
ATTTTGTTATATTATCTGCTGATAAATGGGAACATATCATTTATGAAATGGTTGATCCAC
CAATTTCCCATGTATTTAAAAAAGGTAATTTAGTTTTTTCTAATAATAATTAATAATAAT
TTTTATTATTATTTTTTTTTTTTTATTTTTTTCATTTTTTTTCAAATNAAAATCATTTGT
TTNAATAAAAATAAAAATAAAAATAAAAATAAAAATCATTTCCTTAAAANGGAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
gf*ffflifi*ttkqinlkkwdsiln*KFAXASQLVVISKGKPFLIGKEMSNIE---

---XGELAGELGCRAISHXXKVSXDGMKAMAATPTFAVLLPTTAYXLRLECPPAXRMIEL
GVPVALGSDFNPNAHCLSMPFVMNLACXLMKMNMNESLVAATLNAAASINKSSTHGSLXV
GKFADFVILSADKWEHIIYEMVDPPISHVFKKGNLVFSNNN***flllffffyffhffsn
xnhlfx*k*k*k*k*ksfp*xgn
Translated Amino Acid sequence (All Frames) 
Frame A:
wdfdfff*fsfkqlnr*i*kngirf*iknlqxhhn*l*fqkxnhf*lvkk*ailk---

---XGELAGELGCRAISHXXKVSXDGMKAMAATPTFAVLLPTTAYXLRLECPPAXRMIEL
GVPVALGSDFNPNAHCLSMPFVMNLACXLMKMNMNESLVAATLNAAASINKSSTHGSLXV
GKFADFVILSADKWEHIIYEMVDPPISHVFKKGNLVFSNNN***flllffffyffhffsn
xnhlfx*k*k*k*k*ksfp*xgn

Frame B:
giliffsnfhlnn*tdkfkkmgfdfklkickxitiscdfkrxtifnw*rneqy*n---

---xvnwqvswvagqlvxlxrlvkmv*rqwlplqpllyfyqpqltx*dwnvhplxe*ln*
vyqshwevisiqmlivyqclll*i*rvxs*k*i*tnl*llpp*mllpqsinlqlmvhxkl
vnllillyyllingnisfmkwlihqfpmylkkvi*ffliiinnnfyyyffffiffiffqx
kiicxnknknknknknhflkxe

Frame C:
gf*ffflifi*ttkqinlkkwdsiln*KFAXASQLVVISKGKPFLIGKEMSNIE---

---w*igr*vglqgn*sx*xg*xrwyegngchsnlcctftnhslhxkigmstrxknd*ir
ctsrigk*fqskcslfinafcyefsvxtheneyerifscchlkccclnq*ifnswftxsw
*ic*fcyiic**mgtyhl*ng*stnfpci*kr*fsff***liiifiiiffflffsfffkx
ksfvxikikikikikiislkxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE812 (CFE812Q) /CSM/CF/CFE8-A/CFE812Q.Seq.d/                       1011   0.0
SFD841 (SFD841Q) /CSM/SF/SFD8-B/SFD841Q.Seq.d/                        601   e-171
AFK679 (AFK679Q) /CSM/AF/AFK6-D/AFK679Q.Seq.d/                        589   e-167
VFB373 (VFB373Q) /CSM/VF/VFB3-D/VFB373Q.Seq.d/                        406   e-112
SFC458 (SFC458Q) /CSM/SF/SFC4-C/SFC458Q.Seq.d/                        345   6e-94
VFB835 (VFB835Q) /CSM/VF/VFB8-B/VFB835Q.Seq.d/                        208   9e-53
AFM563 (AFM563Q) /CSM/AF/AFM5-C/AFM563Q.Seq.d/                        194   1e-48
AFM463 (AFM463Q) /CSM/AF/AFM4-C/AFM463Q.Seq.d/                        194   1e-48
VFN309 (VFN309Q) /CSM/VF/VFN3-A/VFN309Q.Seq.d/                         36   0.77
VFK719 (VFK719Q) /CSM/VF/VFK7-A/VFK719Q.Seq.d/                         36   0.77
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE002140|AE002140.1 Ureaplasma urealyticum section 41 of 59 of the complete genome.    52   0.012  1
AF085733|AF085733.2 Ureaplasma urealyticum serovar 14 urease complex component UreA (ureA), urease complex component UreB (ureB), urease complex component UreC (ureC), urease complex component UreE (ureE), urease complex component UreF (ureF), urease complex component UreG (ureG), and urease complex component UreD (ureD) genes, complete cds; and unknown gene.    52   0.012  1
AF085731|AF085731.2 Ureaplasma urealyticum serovar 1 urease complex component UreA (ureA), urease complex component UreB (ureB), urease complex component UreC (ureC), urease complex component UreE (ureE), urease complex component UreF (ureF), urease complex component UreG (ureG), and urease complex component UreD (ureD) genes, complete cds; and unknown gene.    52   0.012  1
AF085730|AF085730.2 Ureaplasma urealyticum serovar 6 urease complex component UreA (ureA), urease complex component UreB (ureB), urease complex component UreC (ureC), urease complex component UreE (ureE), urease complex component UreF (ureF), urease complex component UreG (ureG), and urease complex component UreD (ureD) genes, complete cds; and unknown gene.    52   0.012  1
L40489|L40489.1 Ureaplasma urealyticum UreA (ureA), UreB (ureB), UreC (ureC), UreE (ureE), UreF (ureF), and UreG (ureG) genes, complete cds; UreD (ureD) gene, partial cds; and unknown gene.    52   0.012  1
CB830530|CB830530.1 ri18c04.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5' similar to TR:Q22419 Q22419 COSMID T12A2. [1] ;, mRNA sequence.    48   0.19   1
AJ508355|AJ508355.1 Brugia malayi ORF1, ORF2, ORF3 and ORF4 DNA and alt-1 gene.    36   0.70   5
M24108|M24108.1 Rattus norvegicus (clone A2U42) alpha2u globulin gene, exons 1-7.    46   0.75   1
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   1.2    6
AC068057|AC068057.5 Homo sapiens BAC clone CTD-2015C24 from 2, complete sequence.    40   1.8    3
dna update 2004. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55CY3) RecName: Full=Probable imidazolonepropionase;          ...   301   2e-80
(A7RX26) RecName: Full=Probable imidazolonepropionase;          ...   187   3e-46
BT076079_1(BT076079|pid:none) Caligus rogercresseyi clone crog-e...   174   4e-42
BT080425_1(BT080425|pid:none) Caligus clemensi clone ccle-evs-52...   173   6e-42
BC055559_1(BC055559|pid:none) Danio rerio hypothetical protein L...   169   7e-41
(Q7SXK5) RecName: Full=Probable imidazolonepropionase;          ...   169   7e-41
BC055025_1(BC055025|pid:none) Mus musculus amidohydrolase domain...   167   4e-40
(Q9DBA8) RecName: Full=Probable imidazolonepropionase;          ...   167   4e-40
AK122802_1(AK122802|pid:none) Homo sapiens cDNA FLJ16380 fis, cl...   165   1e-39
(Q96NU7) RecName: Full=Probable imidazolonepropionase;          ...   165   1e-39
protein update 2009. 5.13
PSORT 

 psg: 0.86  gvh: 0.45  alm: 0.39  top: 0.47  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFE812 is cyt
5' end seq. ID CFE812F
5' end seq. 
>CFE812F.Seq
TGGGATTTTGATTTTTTTTTCTAATTTTCATTTAAACAACTAAACAGATAAATTTAAAAA
AATGGGATTCGATTTTAAATTAAAAATTTGCAAANGCATCACAATTAGTTGTGATTTCAA
AAGGNAAACCATTTTTAATTGGTAAAGAAATGAGCAATATTGAAAT----------
Length of 5' end seq. 166
3' end seq. ID CFE812Z
3' end seq. 
>CFE812Z.Seq
----------TNTGGTGAATTGGCAGGTGAGTTGGGTTGCAGGGCAATTAGTCATNTTGA
NAAGGTTAGTNAAGATGGTATGAAGGCAATGGCTGCCACTCCAACCTTTGCTGTACTTTT
ACCAACCACAGCTTACATNTTAAGATTGGAATGTCCACCCGCTANAAGAATGATTGAATT
AGGTGTACCAGTCGCATTGGGAAGTGATTTCAATCCAAATGCTCATTGTTTATCAATGCC
TTTTGTTATGAATTTAGCGTGTGNACTCATGAAAATGAATATGAACGAATCTTTAGTTGC
TGCCACCTTAAATGCTGCTGCCTCAATCAATAAATCTTCAACTCATGGTTCACTANAAGT
TGGTAAATTTGCTGATTTTGTTATATTATCTGCTGATAAATGGGAACATATCATTTATGA
AATGGTTGATCCACCAATTTCCCATGTATTTAAAAAAGGTAATTTAGTTTTTTCTAATAA
TAATTAATAATAATTTTTATTATTATTTTTTTTTTTTTATTTTTTTCATTTTTTTTCAAA
TNAAAATCATTTGTTTNAATAAAAATAAAAATAAAAATAAAAATAAAAATCATTTCCTTA
AAANGGAAAT
Length of 3' end seq. 600
Connected seq. ID CFE812P
Connected seq. 
>CFE812P.Seq
TGGGATTTTGATTTTTTTTTCTAATTTTCATTTAAACAACTAAACAGATAAATTTAAAAA
AATGGGATTCGATTTTAAATTAAAAATTTGCAAANGCATCACAATTAGTTGTGATTTCAA
AAGGNAAACCATTTTTAATTGGTAAAGAAATGAGCAATATTGAAAT----------TNTG
GTGAATTGGCAGGTGAGTTGGGTTGCAGGGCAATTAGTCATNTTGANAAGGTTAGTNAAG
ATGGTATGAAGGCAATGGCTGCCACTCCAACCTTTGCTGTACTTTTACCAACCACAGCTT
ACATNTTAAGATTGGAATGTCCACCCGCTANAAGAATGATTGAATTAGGTGTACCAGTCG
CATTGGGAAGTGATTTCAATCCAAATGCTCATTGTTTATCAATGCCTTTTGTTATGAATT
TAGCGTGTGNACTCATGAAAATGAATATGAACGAATCTTTAGTTGCTGCCACCTTAAATG
CTGCTGCCTCAATCAATAAATCTTCAACTCATGGTTCACTANAAGTTGGTAAATTTGCTG
ATTTTGTTATATTATCTGCTGATAAATGGGAACATATCATTTATGAAATGGTTGATCCAC
CAATTTCCCATGTATTTAAAAAAGGTAATTTAGTTTTTTCTAATAATAATTAATAATAAT
TTTTATTATTATTTTTTTTTTTTTATTTTTTTCATTTTTTTTCAAATNAAAATCATTTGT
TTNAATAAAAATAAAAATAAAAATAAAAATAAAAATCATTTCCTTAAAANGGAAAT
Length of connected seq. 766
Full length Seq ID -
Full length Seq. -
Length of full length seq. -