CFE801
Library CF
(Link to library)
Clone ID CFE801
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12894-1
Original site URL
Representative seq. ID CFE801Z
(Link to Original site)
Representative DNA sequence
>CFE801 (CFE801Q) /CSM/CF/CFE8-A/CFE801Q.Seq.d/
XXXXXXXXXXATGTATTAATTTACCTATAAACTGTGATGATGGAAATTATTGTACTAAAG
ATTATTGTGATCCAACATATGGATGTTTACATATCGAAACTGCAAATTGCACTGAATGTT
TAGAAACAGGTTGTATAACTGTTCTCCCATGTTTCCCAGTAACATGTGACAGTTTAAATA
GTAGCCACTGTGTTGCTAGTGCTATGAATTGCTCAGATAACGATCCATGTACATCAACAG
AATGCGTTAATGGAGAATGTACATATGAGTGGATTTGTGGATCAGAAGATTCATCATCTG
GTGTTGTAGATTCATCATCTGGTGTTGTAGATTCATCATCTGATGTTATTGATTCTTCAG
ATATTATTATTGATTCTTCATCCGATATCCCAATACCAACACTATCACCTTCCCCTCAAC
CATCACGTTTCCCAACTGATACACCAACTAATACACCAATGCCACCAACCCGTCCTCCAA
CTCCAACTGAAGATCCAAAGATATATGAAGATCCAGAAGATTTAGATAAAGATTGTTTAC
ATTGTAAAGATTTAGGTTGCATACTAACTGGTAAAAGNTGTGGNACTTAAAAAATGAAAA
ATACGAANAATCAAATTGTAAAGAGAATTGTTGTTCACATACTCCAACTTGTTTTTAAAT
TTTCNATTTAATTTTAAACAAATAAAAAAATAAATAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---CINLPINCDDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNS
SHCVASAMNCSDNDPCTSTECVNGECTYEWICGSEDSSSGVVDSSSGVVDSSSDVIDSSD
IIIDSSSDIPIPTLSPSPQPSRFPTDTPTNTPMPPTRPPTPTEDPKIYEDPEDLDKDCLH
CKDLGCILTGKXCGT*kmkntxnqivkrivvhilqlvfkfsi*f*tnkkink


Translated Amino Acid sequence (All Frames)
Frame A:
---CINLPINCDDGNYCTKDYCDPTYGCLHIETANCTECLETGCITVLPCFPVTCDSLNS
SHCVASAMNCSDNDPCTSTECVNGECTYEWICGSEDSSSGVVDSSSGVVDSSSDVIDSSD
IIIDSSSDIPIPTLSPSPQPSRFPTDTPTNTPMPPTRPPTPTEDPKIYEDPEDLDKDCLH
CKDLGCILTGKXCGT*kmkntxnqivkrivvhilqlvfkfsi*f*tnkkink


Frame B:
---vliyl*tvmmeiivlkiiviqhmdvyisklqialnv*kqvv*lfshvsq*hvtv*iv
atvllvl*iaqitihvhqqnalmenvhmsgfvdqkihhlvl*ihhlvl*ihhlmllilqi
lllilhpisqyqhyhlplnhhvsqlihqlihqchqpvlqlqlkiqrymkiqki*ikivyi
vki*vay*lvkxvxlkk*kirxikl*rellftysnlflnfxfnfkqikk*in


Frame C:
---y*ftykl**wklly*rll*sniwmftyrncklh*mfrnrlyncspmfpsnm*qfk**
plcc*cyellr*rsmyinrmr*wrmyi*vdlwirrfiiwccrfiiwccrfii*cy*ffry
yy*ffirypntntitfpstitfpn*ytn*ytnatnpssnsn*rskdi*rsrrfr*rlftl
*rfrlhtnw*kxwxlknekyexsnckenccshtptcf*ifxlilnk*knk*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE801 (CFE801Q) /CSM/CF/CFE8-A/CFE801Q.Seq.d/ 1134 0.0
SFJ670 (SFJ670Q) /CSM/SF/SFJ6-C/SFJ670Q.Seq.d/ 1122 0.0
SFI718 (SFI718Q) /CSM/SF/SFI7-A/SFI718Q.Seq.d/ 1122 0.0
CHD453 (CHD453Q) /CSM/CH/CHD4-C/CHD453Q.Seq.d/ 1122 0.0
CFI858 (CFI858Q) /CSM/CF/CFI8-C/CFI858Q.Seq.d/ 1122 0.0
CFA542 (CFA542Q) /CSM/CF/CFA5-B/CFA542Q.Seq.d/ 1122 0.0
AFM178 (AFM178Q) /CSM/AF/AFM1-D/AFM178Q.Seq.d/ 1122 0.0
AFL748 (AFL748Q) /CSM/AF/AFL7-B/AFL748Q.Seq.d/ 1122 0.0
AFE543 (AFE543Q) /CSM/AF/AFE5-B/AFE543Q.Seq.d/ 1122 0.0
AFE264 (AFE264Q) /CSM/AF/AFE2-C/AFE264Q.Seq.d/ 1122 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 46 0.002 2
AC147774|AC147774.1 Medicago truncatula chromosome 2 clone mth2-10c8, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces. 34 0.13 5
CG386518|CG386518.1 ZMMBBb0241P02.f ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0241P02 5', genomic survey sequence. 46 0.67 1
BZ502132|BZ502132.1 BONNW52TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONNW52, DNA sequence. 40 1.8 2
AC115935|AC115935.4 Mus musculus chromosome 3 clone RP24-545D23 map 3, WORKING DRAFT SEQUENCE, 4 ordered pieces. 34 2.5 6
BQ024371|BQ024371.1 UI-1-BB1p-aup-h-11-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-aup-h-11-0-UI 3', mRNA sequence. 30 4.3 3
CD218280|BC021250.1 Homo sapiens, clone MGC:29744 IMAGE:3347567, mRNA, complete cds, mRNA sequence. 36 5.1 2
BU248365|BU248365.1 603781766F1 CSEQCHN34 Gallus gallus cDNA clone ChEST731c18 5', mRNA sequence. 36 5.3 2
BU305053|BU305053.1 603736003F1 CSEQCHN56 Gallus gallus cDNA clone ChEST626e1 5', mRNA sequence. 36 5.4 2
CK426247|CK426247.1 AUF_IpTes_24_l09 Testis cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 34 6.6 2
dna update 2004. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 255 8e-77
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 83 9e-15
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 79 1e-13
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 76 8e-13
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 66 9e-10
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 66 9e-10
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 66 1e-09
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 65 2e-09
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 62 1e-08
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 56 9e-07
protein update 2009. 5.13
PSORT

psg: 0.75 gvh: 0.50 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: peroxisomal
4.0 %: mitochondrial

>> prediction for CFE801 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFE801Z
3' end seq.
>CFE801Z.Seq
----------ATGTATTAATTTACCTATAAACTGTGATGATGGAAATTATTGTACTAAAG
ATTATTGTGATCCAACATATGGATGTTTACATATCGAAACTGCAAATTGCACTGAATGTT
TAGAAACAGGTTGTATAACTGTTCTCCCATGTTTCCCAGTAACATGTGACAGTTTAAATA
GTAGCCACTGTGTTGCTAGTGCTATGAATTGCTCAGATAACGATCCATGTACATCAACAG
AATGCGTTAATGGAGAATGTACATATGAGTGGATTTGTGGATCAGAAGATTCATCATCTG
GTGTTGTAGATTCATCATCTGGTGTTGTAGATTCATCATCTGATGTTATTGATTCTTCAG
ATATTATTATTGATTCTTCATCCGATATCCCAATACCAACACTATCACCTTCCCCTCAAC
CATCACGTTTCCCAACTGATACACCAACTAATACACCAATGCCACCAACCCGTCCTCCAA
CTCCAACTGAAGATCCAAAGATATATGAAGATCCAGAAGATTTAGATAAAGATTGTTTAC
ATTGTAAAGATTTAGGTTGCATACTAACTGGTAAAAGNTGTGGNACTTAAAAAATGAAAA
ATACGAANAATCAAATTGTAAAGAGAATTGTTGTTCACATACTCCAACTTGTTTTTAAAT
TTTCNATTTAATTTTAAACAAATAAAAAAATAAATAAATA
Length of 3' end seq. 690
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -