CFE781
Library CF
(Link to library)
Clone ID CFE781
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15547-1
Original site URL
Representative seq. ID CFE781P
(Link to Original site)
Representative DNA sequence
>CFE781 (CFE781Q) /CSM/CF/CFE7-D/CFE781Q.Seq.d/
AAATGGTGATGAAGCAATGTCAAATGGTGCTGCATTTTATGCAGCAAGTTTAACACATTA
TTTTAAAGTTAAAGAAATTAAACTTAAAGATATTTTATTAAATTCAGTTGATGTTGAAAT
TAATAATAATATAATTAATAGTGGCGGTGCTGGTGAAACTTTATTAGAAGAAACTGAAGX
XXXXXXXXXAAGAATTGGATAAAACATCTGCATGGTTATCGGATGCTTTGGATAATGATA
ATACTGAAACCGAGGAATNCCGTAAACAATTGAAAGATATTAAAAAGAAAGCTGACAAAA
TCGTTAACCGTGTCTNTCAATACCAATTGGTACCTGTCGCATTGGAAGAGTTGGAAGACA
CTGTTGATAAAGTTAAACCAATGTTTGAAATCGCTTCAAAGGATTTAAATGTAACCGCTG
AGGAATTAAAAGAAACTACTGATAAAATTCAATCCGTTTCCGATTGGGTACAAGAAAAGA
AATCTGAATTCAAATTAGCTGATTATTCAAAAGATTTACAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
NGDEAMSNGAAFYAASLTHYFKVKEIKLKDILLNSVDVEINNNIINSGGAGETLLEETE-
--

---ELDKTSAWLSDALDNDNTETEEXRKQLKDIKKKADKIVNRVXQYQLVPVALEELEDT
VDKVKPMFEIASKDLNVTAEELKETTDKIQSVSDWVQEKKSEFKLADYSKDLQ


Translated Amino Acid sequence (All Frames)
Frame A:
kw**snvkwccilcskfntlf*s*rn*t*ryfikfs*c*n***yn**wrcw*nfirrn*-
--

---knwikhlhgyrmlwimiilkprnxvnn*kilkrkltksltvsxntnwylshwkswkt
lliklnqclkslqri*m*plrn*kkllikfnpfpigykkrnlnsn*liiqkiyk

Frame B:
NGDEAMSNGAAFYAASLTHYFKVKEIKLKDILLNSVDVEINNNIINSGGAGETLLEETE-
--

---rig*nicmvigcfg***y*nrgxp*tiery*kes*qnr*pclsipigtcrigrvgrh
c**s*tnv*nrfkgfkcnr*gikrny**nsirfrlgtrkei*iqis*lfkrftn

Frame C:
mvmkqcqmvlhfmqqv*hiilklkklnlkify*iqlmlkliii*livavlvkly*kklk-
--

---ELDKTSAWLSDALDNDNTETEEXRKQLKDIKKKADKIVNRVXQYQLVPVALEELEDT
VDKVKPMFEIASKDLNVTAEELKETTDKIQSVSDWVQEKKSEFKLADYSKDLQ

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE781 (CFE781Q) /CSM/CF/CFE7-D/CFE781Q.Seq.d/ 965 0.0
SHG291 (SHG291Q) /CSM/SH/SHG2-D/SHG291Q.Seq.d/ 650 0.0
SHF237 (SHF237Q) /CSM/SH/SHF2-B/SHF237Q.Seq.d/ 650 0.0
SHC629 (SHC629Q) /CSM/SH/SHC6-B/SHC629Q.Seq.d/ 650 0.0
SFA772 (SFA772Q) /CSM/SF/SFA7-C/SFA772Q.Seq.d/ 650 0.0
CHN872 (CHN872Q) /CSM/CH/CHN8-C/CHN872Q.Seq.d/ 650 0.0
CHH729 (CHH729Q) /CSM/CH/CHH7-B/CHH729Q.Seq.d/ 650 0.0
CHG529 (CHG529Q) /CSM/CH/CHG5-B/CHG529Q.Seq.d/ 650 0.0
CHE838 (CHE838Q) /CSM/CH/CHE8-B/CHE838Q.Seq.d/ 650 0.0
AHR122 (AHR122Q) /CSM/AH/AHR1-A/AHR122Q.Seq.d/ 650 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 650 0.0 16
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 34 3e-09 18
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 40 1e-06 15
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 34 8e-06 15
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 38 1e-05 14
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 38 2e-05 22
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 2e-05 15
AL034559|AL034559.4 Plasmodium falciparum MAL3P7. 32 3e-05 12
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 32 4e-05 13
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 38 1e-04 13
dna update 2004. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM269894_93(AM269894|pid:none) Eimeria tenella chromosome 1, ord... 38 0.17
AL021811_17(AL021811|pid:none) Arabidopsis thaliana DNA chromoso... 37 0.28
AY150465_1(AY150465|pid:none) Arabidopsis thaliana unknown prote... 37 0.28
CP000487_999(CP000487|pid:none) Campylobacter fetus subsp. fetus... 37 0.37
U43121_1(U43121|pid:none) Naegleria fowleri heat-shock protein S... 34 1.9
CP000813_1507(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 34 2.4
CP000081_469(CP000081|pid:none) Leishmania major chromosome 35, ... 34 2.5
CP000749_4010(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 33 3.1
AE016816_272(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 33 3.1
BC019785_1(BC019785|pid:none) Mus musculus hypoxia up-regulated ... 33 3.2
protein update 2009. 5.13
PSORT

psg: 0.75 gvh: 0.33 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for CFE781 is nuc

5' end seq. ID CFE781F
5' end seq.
>CFE781F.Seq
AAATGGTGATGAAGCAATGTCAAATGGTGCTGCATTTTATGCAGCAAGTTTAACACATTA
TTTTAAAGTTAAAGAAATTAAACTTAAAGATATTTTATTAAATTCAGTTGATGTTGAAAT
TAATAATAATATAATTAATAGTGGCGGTGCTGGTGAAACTTTATTAGAAGAAACTGAAG-
---------
Length of 5' end seq. 179
3' end seq. ID CFE781Z
3' end seq.
>CFE781Z.Seq
----------AAGAATTGGATAAAACATCTGCATGGTTATCGGATGCTTTGGATAATGAT
AATACTGAAACCGAGGAATNCCGTAAACAATTGAAAGATATTAAAAAGAAAGCTGACAAA
ATCGTTAACCGTGTCTNTCAATACCAATTGGTACCTGTCGCATTGGAAGAGTTGGAAGAC
ACTGTTGATAAAGTTAAACCAATGTTTGAAATCGCTTCAAAGGATTTAAATGTAACCGCT
GAGGAATTAAAAGAAACTACTGATAAAATTCAATCCGTTTCCGATTGGGTACAAGAAAAG
AAATCTGAATTCAAATTAGCTGATTATTCAAAAGATTTACAAAC
Length of 3' end seq. 334
Connected seq. ID CFE781P
Connected seq.
>CFE781P.Seq
AAATGGTGATGAAGCAATGTCAAATGGTGCTGCATTTTATGCAGCAAGTTTAACACATTA
TTTTAAAGTTAAAGAAATTAAACTTAAAGATATTTTATTAAATTCAGTTGATGTTGAAAT
TAATAATAATATAATTAATAGTGGCGGTGCTGGTGAAACTTTATTAGAAGAAACTGAAG-
---------AAGAATTGGATAAAACATCTGCATGGTTATCGGATGCTTTGGATAATGATA
ATACTGAAACCGAGGAATNCCGTAAACAATTGAAAGATATTAAAAAGAAAGCTGACAAAA
TCGTTAACCGTGTCTNTCAATACCAATTGGTACCTGTCGCATTGGAAGAGTTGGAAGACA
CTGTTGATAAAGTTAAACCAATGTTTGAAATCGCTTCAAAGGATTTAAATGTAACCGCTG
AGGAATTAAAAGAAACTACTGATAAAATTCAATCCGTTTCCGATTGGGTACAAGAAAAGA
AATCTGAATTCAAATTAGCTGATTATTCAAAAGATTTACAAAC
Length of connected seq. 513
Full length Seq ID -
Full length Seq. -
Length of full length seq. -