NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE779
Library CF
(Link to library)
Clone ID CFE779
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15009-1
Original site URL
Representative seq. ID CFE779P
(Link to Original site)
Representative DNA sequence 
>CFE779 (CFE779Q) /CSM/CF/CFE7-D/CFE779Q.Seq.d/
ATGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGCNATGGTA
AAGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTTT
TAGTTTGCACATCAAGATTTTGGTTTAACTATAGACATATAGCAAATGTNTTAGGTTTTT
ATAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGATG
ATATGGCATGTAATCCTACAAATTCATAXXXXXXXXXXAAAGTGTTGANCCACATAATGT
AACATTATATCAATTGTTCAATACATATAGTCCACAAAAATTACAATCACATAGTGAATA
TAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTGTTACAGACTTTTTTGGTTC
TGTAATGAGAGCTGATTTAACTCCTTCNACNATTGTAAATGANAAACAAAAAGATGANAA
AGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATAATAATAACAACGATAATGT
AAAAAAACAAACNCCAAAAACTNAACANATTTCATATAGANTTACAGAGAANCCAACATC
NATCCAAGTACACACATAACAAAGATAGTGAANTAAATCTTTTCAATTCAAAATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
GGAMGYEQPKTNFYNGGXGKADYNVEHFFRGEHTNNWALLVCTSRFWFNYRHIANVLGFY
RTVKKLGIPDSQIILMLADDMACNPTNS---

---SVXPHNVTLYQLFNTYSPQKLQSHSEYRTDLFNRPLDQVPVTDFFGSVMRADLTPST
IVNXKQKDXKVEKDETTVNNNNNNNNNDNVKKQTPKTXXISYRXTEXPTSIQVHT*qr**
xksfqfki
Translated Amino Acid sequence (All Frames) 
Frame A:
mvgrwdmnnqkqtfimvamvkriimlnifsevniqiighf*fahqdfgltidi*qmx*vf
iellrn*vylihkly*c*qmiwhvilqih---

---kvlxhim*hyincsihivhknynhivnigqiysidh*ikfllqtflvl**eli*llx
xl*mxnkkmxk*kkmkll*iiiiiiittim*knkxqklnxfhixlqrxqhxskythnkds
exnlfnsk

Frame B:
wwgdgi*ttknkll*wwxw*sgl*c*tffqr*tyk*lgtfslhikilv*l*tyskcxrfl
*nc*eiryt*ftnyinvsr*ygm*sykfi---

---kc*xt*cniisivqyi*stkitit**i*drfiq*tirssscyrlfwfcnes*fnsfx
xck*xtkr*xsrkr*nyck*******qr*ckktnxknxtxfi*xyrexnixpsthitkiv
x*ifsiqn

Frame C:
GGAMGYEQPKTNFYNGGXGKADYNVEHFFRGEHTNNWALLVCTSRFWFNYRHIANVLGFY
RTVKKLGIPDSQIILMLADDMACNPTNS---

---SVXPHNVTLYQLFNTYSPQKLQSHSEYRTDLFNRPLDQVPVTDFFGSVMRADLTPST
IVNXKQKDXKVEKDETTVNNNNNNNNNDNVKKQTPKTXXISYRXTEXPTSIQVHT*qr**
xksfqfki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE779 (CFE779Q) /CSM/CF/CFE7-D/CFE779Q.Seq.d/                        815   0.0
SFL282 (SFL282Q) /CSM/SF/SFL2-D/SFL282Q.Seq.d/                        504   e-141
SFJ248 (SFJ248Q) /CSM/SF/SFJ2-B/SFJ248Q.Seq.d/                        504   e-141
CFH352 (CFH352Q) /CSM/CF/CFH3-C/CFH352Q.Seq.d/                        504   e-141
CFB364 (CFB364Q) /CSM/CF/CFB3-C/CFB364Q.Seq.d/                        504   e-141
AFJ746 (AFJ746Q) /CSM/AF/AFJ7-B/AFJ746Q.Seq.d/                        504   e-141
VFB704 (VFB704Q) /CSM/VF/VFB7-A/VFB704Q.Seq.d/                        498   e-140
SFD257 (SFD257Q) /CSM/SF/SFD2-C/SFD257Q.Seq.d/                        496   e-139
CFH296 (CFH296Q) /CSM/CF/CFH2-D/CFH296Q.Seq.d/                        496   e-139
CHD461 (CHD461Q) /CSM/CH/CHD4-C/CHD461Q.Seq.d/                        490   e-137
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI515788|BI515788.1 BB160020B10A08.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020B10A08 5', mRNA sequence.    70   1e-17  3
BI515765|BI515765.1 BB160020A20B07.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020A20B07 5', mRNA sequence.    70   1e-17  3
BI507800|BI507800.1 BB170001B10H11 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170001B10H11 5', mRNA sequence.    70   5e-17  3
AL805979|AL805979.7 Mouse DNA sequence from clone RP23-172B20 on chromosome X.    38   3e-04  4
AC132387|AC132387.2 Mus musculus chromosome UNK clone RP23-440M14, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38   0.001  7
AC132409|AC132409.1 Mus musculus chromosome UNK clone RP23-346B1, WORKING DRAFT SEQUENCE, 7 unordered pieces.    40   0.001  6
BX000995|BX000995.12 Mouse DNA sequence from clone RP23-106K17 on chromosome 11.    38   0.002  6
AL954716|AL954716.16 Mouse DNA sequence from clone RP23-345A23 on chromosome 4.    38   0.002  4
BU835350|BU835350.1 T072G09 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    38   0.002  2
BU824990|BU824990.1 UK102C04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    38   0.002  2
dna update 2004. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR860289_1(CR860289|pid:none) Pongo abelii mRNA; cDNA DKFZp459A1...   114   3e-24
(Q3MHZ7) RecName: Full=GPI-anchor transamidase;          Short=G...   114   3e-24
(Q92643) RecName: Full=GPI-anchor transamidase;          Short=G...   114   3e-24
(Q5R6L8) RecName: Full=GPI-anchor transamidase;          Short=G...   114   3e-24
AJ851449_1(AJ851449|pid:none) Gallus gallus mRNA for hypothetica...   112   7e-24
AK046246_1(AK046246|pid:none) Mus musculus adult male corpora qu...   112   1e-23
AK043033_1(AK043033|pid:none) Mus musculus 7 days neonate cerebe...   112   1e-23
AK168666_1(AK168666|pid:none) Mus musculus 17 days embryo kidney...   112   1e-23
AK013853_1(AK013853|pid:none) Mus musculus 12 days embryo head c...   112   1e-23
BC106240_1(BC106240|pid:none) Xenopus laevis hypothetical LOC495...   111   2e-23
protein update 2009. 5.13
PSORT 

 psg: 0.72  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.07  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CFE779 is nuc
5' end seq. ID CFE779F
5' end seq. 
>CFE779F.Seq
ATGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGCNATGGTA
AAGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTTT
TAGTTTGCACATCAAGATTTTGGTTTAACTATAGACATATAGCAAATGTNTTAGGTTTTT
ATAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGATG
ATATGGCATGTAATCCTACAAATTCATA----------
Length of 5' end seq. 268
3' end seq. ID CFE779Z
3' end seq. 
>CFE779Z.Seq
----------AAAGTGTTGANCCACATAATGTAACATTATATCAATTGTTCAATACATAT
AGTCCACAAAAATTACAATCACATAGTGAATATAGGACAGATTTATTCAATAGACCATTA
GATCAAGTTCCTGTTACAGACTTTTTTGGTTCTGTAATGAGAGCTGATTTAACTCCTTCN
ACNATTGTAAATGANAAACAAAAAGATGANAAAGTAGAAAAAGATGAAACTACTGTAAAT
AATAATAATAATAATAATAACAACGATAATGTAAAAAAACAAACNCCAAAAACTNAACAN
ATTTCATATAGANTTACAGAGAANCCAACATCNATCCAAGTACACACATAACAAAGATAG
TGAANTAAATCTTTTCAATTCAAAATT
Length of 3' end seq. 377
Connected seq. ID CFE779P
Connected seq. 
>CFE779P.Seq
ATGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGCNATGGTA
AAGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTTT
TAGTTTGCACATCAAGATTTTGGTTTAACTATAGACATATAGCAAATGTNTTAGGTTTTT
ATAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGATG
ATATGGCATGTAATCCTACAAATTCATA----------AAAGTGTTGANCCACATAATGT
AACATTATATCAATTGTTCAATACATATAGTCCACAAAAATTACAATCACATAGTGAATA
TAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTGTTACAGACTTTTTTGGTTC
TGTAATGAGAGCTGATTTAACTCCTTCNACNATTGTAAATGANAAACAAAAAGATGANAA
AGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATAATAATAACAACGATAATGT
AAAAAAACAAACNCCAAAAACTNAACANATTTCATATAGANTTACAGAGAANCCAACATC
NATCCAAGTACACACATAACAAAGATAGTGAANTAAATCTTTTCAATTCAAAATT
Length of connected seq. 645
Full length Seq ID -
Full length Seq. -
Length of full length seq. -