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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE749
Library CF
(Link to library)
Clone ID CFE749
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12859-1|Contig-U16301-1
Original site URL
Representative seq. ID CFE749P
(Link to Original site)
Representative DNA sequence 
>CFE749 (CFE749Q) /CSM/CF/CFE7-C/CFE749Q.Seq.d/
ATTTATTTATATAAATAAACTACACATTATAATGTCTGTAACTTTAAAAAATATTATTGC
ACCAACACCAGCAACTACTCGTGGTAAATCAGTAGCAATTAATGGTGACCCAAAGGGTGA
AAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAAGAATCCAATGGT
AGCAGATATTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTATGCACCAAGTGG
TAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGATACATTACAAAA
GGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCTTGATATTGCATG
GACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAGATTTGGTGCAGC
CATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTCAAAGATGATTCT
CTXXXXXXXXXXACCTCAATTAAAATCAATGGTGATCAACCTCATTACTTGCGCTATGGA
TGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTGAAAGTATTGGTGTAGA
TAGTCCAGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTGCTGTCTCAATGAAAAC
CATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGAACCAAC
CTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGATTCACGT
TTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCGTGGTGC
TATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTCAAATCG
TGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCATACCGC
TCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTCACTCGA
TTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGTTAAAAA
CTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATAAATTTTCTCTGCA
GGTAATAAGGGCTATTAAAATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
FIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMV
ADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAW
TSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMIL---

---PQLKSMVINLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSGDVVVAVSMKTI
YVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTASHTLDNHRGAI
TDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSNDSKFVASASLDS
QIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNKFSLQVIRAIKI
Translated Amino Acid sequence (All Frames) 
Frame A:
iylyk*tthynvcnfkkyyctntsnysw*issn*w*pkg*kycickw*qyyy*kckesng
sryll*tsmsnhcckvctkw*lyckw*csr*ftylgyitkgtylksnlqsiewcnp*ycm
dir*stfscsw*w*reiwcshplg*wfimw*nhwslkdds---

---tsikingdqphylryg**c*nlkyl*knlw*kywcr*ssssccflw*ccrcclnenh
lch*rw*nrftncchlgtnlcchq*y*sfsrw*r*qdsrfhsqw*qfncqsyfr*sswcy
yrsfiltmw*ifsfrlfks*syrlew*rsqi*rlg*pyrsy*ccrlv**f*icclcftrf
snlhlec*ksnrftsss*klsfrwcq*cylwfkq*ifsagnkgy*n

Frame B:
FIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMV
ADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAW
TSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMIL---

---PQLKSMVINLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSGDVVVAVSMKTI
YVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTASHTLDNHRGAI
TDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSNDSKFVASASLDS
QIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNKFSLQVIRAIKI

Frame C:
lfi*inytl*cl*l*killhqhqqllvvnq*qlmvtqrvkilymqvvavlllem*riqw*
qiftmnihvkpllqsmhqvviilqvvmfkviyvfgihykrnis*kqltky*mvqslilhg
hqiinv*l*lvmvkrdlvqpsfgivvhhvvkslvtqr*fs---

---ln*nqw*stsllalwmivlksqvslkkpmvkvlv*ivqlklllslvmlsllsq*kpf
mslkvvksfhkllplgnqpllpsmilkfqsvvkitrftfslsvvti*lpvil*iiivvll
pifhthhvvni*lqvvqivklsfgvvkkpnlkvgltiplvlmlslglmilnllpllhsil
kftfgmlkiqplhqfklktli*vvsmmlfmvqtinflcr**gllk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE749 (CFE749Q) /CSM/CF/CFE7-C/CFE749Q.Seq.d/                       2202   0.0
SFI277 (SFI277Q) /CSM/SF/SFI2-D/SFI277Q.Seq.d/                       1257   0.0
CFC347 (CFC347Q) /CSM/CF/CFC3-B/CFC347Q.Seq.d/                       1243   0.0
SFH157 (SFH157Q) /CSM/SF/SFH1-C/SFH157Q.Seq.d/                       1235   0.0
CHL844 (CHL844Q) /CSM/CH/CHL8-B/CHL844Q.Seq.d/                       1235   0.0
AFI778 (AFI778Q) /CSM/AF/AFI7-D/AFI778Q.Seq.d/                       1235   0.0
CFC301 (CFC301Q) /CSM/CF/CFC3-A/CFC301Q.Seq.d/                       1233   0.0
AFK668 (AFK668Q) /CSM/AF/AFK6-C/AFK668Q.Seq.d/                       1233   0.0
SFH724 (SFH724Q) /CSM/SF/SFH7-A/SFH724Q.Seq.d/                       1229   0.0
CHB782 (CHB782Q) /CSM/CH/CHB7-D/CHB782Q.Seq.d/                       1229   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U36936|U36936.1 Dictyostelium discoideum WD40 repeat protein 2 mRNA, compete cds.  1092   0.0    4
AF045085|AF045085.1 Drosophila subsaltans cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.035  3
L20934|L20934.1 Anopheles gambiae complete mitochondrial genome.    38   0.059  4
AZ333507|AZ333507.1 1M0062E02R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0062E02 R, DNA sequence.    38   0.068  2
AF474077|AF474077.1 Drosophila ananassae cytochrome oxidase II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.    34   0.12   3
BG929294|BG929294.1 HNC60-1-F6.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence.    38   0.23   2
AF045084|AF045084.1 Drosophila sturtevanti 14043-0871.9 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.25   2
AF045083|AF045083.1 Drosophila sturtevanti 14043-0871.2 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.25   2
AF045082|AF045082.1 Drosophila sturtevanti 14045-0901.0 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.25   2
AP003364|AP003364.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 7/9.    38   0.40   7
dna update 2004. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36936_1(U36936|pid:none) Dictyostelium discoideum WD40 repeat p...   393   e-108
(P90587) RecName: Full=66 kDa stress protein; AltName: Full=p66;...   222   2e-56
BT045059_1(BT045059|pid:none) Salmo salar clone ssal-rgf-510-334...   196   1e-48
AY394939_1(AY394939|pid:none) Danio rerio clone RK046A1C09 WD re...   193   8e-48
(O75083) RecName: Full=WD repeat-containing protein 1; AltName: ...   191   5e-47
CR860191_1(CR860191|pid:none) Pongo abelii mRNA; cDNA DKFZp469E0...   190   7e-47
(Q5RKI0) RecName: Full=WD repeat-containing protein 1;  &AY98648...   190   9e-47
(O93277) RecName: Full=WD repeat-containing protein 1; AltName: ...   190   9e-47
EU371513_1(EU371513|pid:none) Canis lupus familiaris WD repeat d...   189   2e-46
AB084171_1(AB084171|pid:none) Cavia porcellus WDR1 mRNA for WD r...   189   2e-46
protein update 2009. 5.13
PSORT 

 psg: 0.90  gvh: 0.37  alm: 0.37  top: 0.50  tms: 0.00  mit: 0.33  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFE749 is cyt
5' end seq. ID CFE749F
5' end seq. 
>CFE749F.Seq
ATTTATTTATATAAATAAACTACACATTATAATGTCTGTAACTTTAAAAAATATTATTGC
ACCAACACCAGCAACTACTCGTGGTAAATCAGTAGCAATTAATGGTGACCCAAAGGGTGA
AAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAAGAATCCAATGGT
AGCAGATATTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTATGCACCAAGTGG
TAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGATACATTACAAAA
GGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCTTGATATTGCATG
GACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAGATTTGGTGCAGC
CATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTCAAAGATGATTCT
CT----------
Length of 5' end seq. 482
3' end seq. ID CFE749Z
3' end seq. 
>CFE749Z.Seq
----------ACCTCAATTAAAATCAATGGTGATCAACCTCATTACTTGCGCTATGGATG
ATAGTGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTGAAAGTATTGGTGTAGATA
GTCCAGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTGCTGTCTCAATGAAAACCA
TTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGAACCAACCT
CTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGATTCACGTTT
TCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCGTGGTGCTA
TTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTCAAATCGTG
AAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCATACCGCTC
GTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTCACTCGATT
CTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGTTAAAAACT
CTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATAAATTTTCTCTGCAGG
TAATAAGGGCTATTAAAATT
Length of 3' end seq. 670
Connected seq. ID CFE749P
Connected seq. 
>CFE749P.Seq
ATTTATTTATATAAATAAACTACACATTATAATGTCTGTAACTTTAAAAAATATTATTGC
ACCAACACCAGCAACTACTCGTGGTAAATCAGTAGCAATTAATGGTGACCCAAAGGGTGA
AAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAAGAATCCAATGGT
AGCAGATATTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTATGCACCAAGTGG
TAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGATACATTACAAAA
GGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCTTGATATTGCATG
GACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAGATTTGGTGCAGC
CATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTCAAAGATGATTCT
CT----------ACCTCAATTAAAATCAATGGTGATCAACCTCATTACTTGCGCTATGGA
TGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTGAAAGTATTGGTGTAGA
TAGTCCAGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTGCTGTCTCAATGAAAAC
CATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGAACCAAC
CTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGATTCACGT
TTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCGTGGTGC
TATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTCAAATCG
TGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCATACCGC
TCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTCACTCGA
TTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGTTAAAAA
CTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATAAATTTTCTCTGCA
GGTAATAAGGGCTATTAAAATT
Length of connected seq. 1152
Full length Seq ID -
Full length Seq. -
Length of full length seq. -