>CFE744 (CFE744Q) /CSM/CF/CFE7-B/CFE744Q.Seq.d/
AACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAATGATTAAAAAATTAATATTA
GATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAATTATTCAAAATCAAAATCA
TTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTTATTAAAAGAAACTGTTGCA
AATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTATGGATGAAACATCAGAATTA
AATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAATGGGTATTGATATTTCAGAT
AGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCATTGCTATTGAAGAATTAGCA
AAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAATACACTCGTTAACAATTGT
ATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTTATCAATGTTGGCAACCAAC
ACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTCTGATGCATTCGCATTGXXX
XXXXXXX

ntlkff*tr*IKKMIKKLILDPKNVSIIKNGIRNYSKSKSFIQPITTLSEEETLLKETVA
NFANEKVRPLVKVMDETSELNKGLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELA
KVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNTVGSFCLSESGSGSDAFA--
-

Frame A:
ntlkff*tr*IKKMIKKLILDPKNVSIIKNGIRNYSKSKSFIQPITTLSEEETLLKETVA
NFANEKVRPLVKVMDETSELNKGLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELA
KVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNTVGSFCLSESGSGSDAFA--
-


Frame B:
th*nffkhvk*kk*lkn*y*iqrmyq*lkmvleiiqnqnhlfnqlqhyqkrkly*kkllq
ilqmkkldh**rlwmkhqn*ikdy*kiysi*i*wvlifqivmvepi*ilwdqslllkn*q
kliqplv***mykihsltivsivmvaynkeksiyqcwqptqlvvfv*vnqaqvlmhsh--
-


Frame C:
hikiflntlnkknd*kinirskecinn*kwy*klfkikiiystnyniirrgnfikrncck
fck*ks*tiskgyg*nirik*riikrfiryefngy*yfr*lwwsqyefyginhcy*risk
s*ssh*cnsrctkytr*qlyqslw*httkrkvfinvgnqhsw*flsk*irlrf*ciri--
-

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD330 (VFD330Q) /CSM/VF/VFD3-B/VFD330Q.Seq.d/                       1017   0.0
SFK863 (SFK863Q) /CSM/SF/SFK8-C/SFK863Q.Seq.d/                       1017   0.0
SFJ234 (SFJ234Q) /CSM/SF/SFJ2-B/SFJ234Q.Seq.d/                       1017   0.0
SFI860 (SFI860Q) /CSM/SF/SFI8-C/SFI860Q.Seq.d/                       1017   0.0
CHE157 (CHE157Q) /CSM/CH/CHE1-C/CHE157Q.Seq.d/                       1017   0.0
CFE744 (CFE744Q) /CSM/CF/CFE7-B/CFE744Q.Seq.d/                       1017   0.0
CFD542 (CFD542Q) /CSM/CF/CFD5-B/CFD542Q.Seq.d/                       1017   0.0
CFC516 (CFC516Q) /CSM/CF/CFC5-A/CFC516Q.Seq.d/                       1017   0.0
AFO692 (AFO692Q) /CSM/AF/AFO6-D/AFO692Q.Seq.d/                       1017   0.0
AFG654 (AFG654Q) /CSM/AF/AFG6-C/AFG654Q.Seq.d/                       1017   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   9e-13  18
AP001118|AP001118.1 Buchnera sp. APS genomic DNA, complete sequence, segment 1/2.    34   4e-08  19
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   7e-07  24
AC005505|AC005505.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38   2e-06  13
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             32   2e-06  19
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   2e-06  19
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12 section 7 of 9 of the complete sequence.    38   2e-05  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   4e-05  18
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   4e-05  13
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    32   5e-05  16

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RR5) RecName: Full=Probable short/branched chain specific ac...   281   1e-74
CU633872_32(CU633872|pid:none) Podospora anserina genomic DNA ch...   141   9e-33
AM269986_26(AM269986|pid:none) Aspergillus niger contig An01c039...   140   2e-32
AP007151_1066(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...   139   5e-32
CR762047_1(CR762047|pid:none) Xenopus tropicalis finished cDNA, ...   135   9e-31
CR382130_634(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   134   1e-30
AY742811_1(AY742811|pid:none) Macaca fascicularis ACADSB mRNA, p...   132   6e-30
AB170478_1(AB170478|pid:none) Macaca fascicularis brain cDNA clo...   132   6e-30
AB169822_1(AB169822|pid:none) Macaca fascicularis brain cDNA, cl...   132   6e-30
AL831821_1(AL831821|pid:none) Homo sapiens mRNA; cDNA DKFZp451K2...   130   2e-29

 psg: 0.62  gvh: 0.24  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for CFE744 is nuc

>CFE744F.Seq
AACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAATGATTAAAAAATTAATATTA
GATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAATTATTCAAAATCAAAATCA
TTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTTATTAAAAGAAACTGTTGCA
AATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTATGGATGAAACATCAGAATTA
AATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAATGGGTATTGATATTTCAGAT
AGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCATTGCTATTGAAGAATTAGCA
AAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAATACACTCGTTAACAATTGT
ATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTTATCAATGTTGGCAACCAAC
ACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTCTGATGCATTCGCATTG---
-------