CFE742
Library CF
(Link to library)
Clone ID CFE742
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFE742P
(Link to Original site)
Representative DNA sequence
>CFE742 (CFE742Q) /CSM/CF/CFE7-B/CFE742Q.Seq.d/
ACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAA
GCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATA
TTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAG
AGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAAT
TAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAG
GTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTT
ATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAG
TCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATC
CAATGGCATGGGATGGTGGTTXXXXXXXXXXAATGTCGCAGAGCGTTTTGGTGTCACCAG
AAAAGACCAAGATGAATTCTCTGTGAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGC
AGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCAT
CGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATT
AAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGA
TGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGT
TGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGG
TCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGA
CGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGG
TTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGG
TGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
PITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKE
TAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCY
TVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGG---

---NVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEG
IREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAF
AAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVN
PNGSGIALGHPLGATGARQMATISRELHR


Translated Amino Acid sequence (All Frames)
Frame A:
tp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklkeehsk
rqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqrkyhv
iqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvv---

---NVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEG
IREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAF
AAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVN
PNGSGIALGHPLGATGARQMATISRELHR

Frame B:
phn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*krsiqr
dstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftkgstml
ysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgww---

---msqsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkv
svrkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*ll
llsvsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkli
qmalvsl*vih*vllvpvkwlpfqenyi

Frame C:
PITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKE
TAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCY
TVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGG---

---crrafwchqkrpr*ilceftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrry
p*enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfc
ccrcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*s
kwlwyrfrssircywcpsngyhfkrits

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE742 (CFE742Q) /CSM/CF/CFE7-B/CFE742Q.Seq.d/ 2179 0.0
VFN260 (VFN260Q) /CSM/VF/VFN2-C/VFN260Q.Seq.d/ 1217 0.0
VFL606 (VFL606Q) /CSM/VF/VFL6-A/VFL606Q.Seq.d/ 1217 0.0
VFJ317 (VFJ317Q) /CSM/VF/VFJ3-A/VFJ317Q.Seq.d/ 1217 0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/ 1217 0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/ 1217 0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/ 1217 0.0
SFK756 (SFK756Q) /CSM/SF/SFK7-C/SFK756Q.Seq.d/ 1217 0.0
SFJ453 (SFJ453Q) /CSM/SF/SFJ4-C/SFJ453Q.Seq.d/ 1217 0.0
SFI740 (SFI740Q) /CSM/SF/SFI7-B/SFI740Q.Seq.d/ 1217 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1217 0.0 8
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence. 40 8e-16 6
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence. 40 5e-12 5
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 4e-11 4
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09. 44 3e-10 4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 2e-09 3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence. 68 2e-08 2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence. 68 2e-08 2
CF213585|CF213585.1 CGF1000794_F07 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0006_IF_F07 5', mRNA sequence. 60 2e-08 3
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence. 68 3e-08 2
dna update 2004. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 376 0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 230 e-105
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698.... 230 e-104
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 228 e-104
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C... 236 e-103
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM... 236 e-103
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3... 226 e-103
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15... 228 e-103
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; ... 231 e-102
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 230 e-102
protein update 2009. 5.13
PSORT

psg: 0.62 gvh: 0.40 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.36 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
20.0 %: mitochondrial
20.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CFE742 is nuc

5' end seq. ID CFE742F
5' end seq.
>CFE742F.Seq
ACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAA
GCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATA
TTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAG
AGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAAT
TAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAG
GTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTT
ATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAG
TCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATC
CAATGGCATGGGATGGTGGTT----------
Length of 5' end seq. 501
3' end seq. ID CFE742Z
3' end seq.
>CFE742Z.Seq
----------AATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTC
TGTGAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAAT
CGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGG
TATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGG
TGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGT
TATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTT
TGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGC
CGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGC
TTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAA
TCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAT
GGCTACCATTTCAAGAGAATTACATCGT
Length of 3' end seq. 618
Connected seq. ID CFE742P
Connected seq.
>CFE742P.Seq
ACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAA
GCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATA
TTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAG
AGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAAT
TAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAG
GTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTT
ATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAG
TCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATC
CAATGGCATGGGATGGTGGTT----------AATGTCGCAGAGCGTTTTGGTGTCACCAG
AAAAGACCAAGATGAATTCTCTGTGAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGC
AGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCAT
CGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATT
AAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGA
TGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGT
TGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGG
TCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGA
CGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGG
TTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGG
TGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGT
Length of connected seq. 1119
Full length Seq ID -
Full length Seq. -
Length of full length seq. -