CFE671
Library CF
(Link to library)
Clone ID CFE671
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14176-1
Original site URL
Representative seq. ID CFE671E
(Link to Original site)
Representative DNA sequence
>CFE671 (CFE671Q) /CSM/CF/CFE6-C/CFE671Q.Seq.d/
ATTTTCCTTTTTTTTTATTTTTTATTTTTTTTAATAAAAACTCAAAACAACACACACTTA
CACAATATATTTACTATTTTAAATTATATCTAAATCCGACAACAACAATAACAATAACAA
CAACAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGATTTCACAGTT
TATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTTTTTCTCATTT
TGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTCACAACAAGCA
ATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAACAAATGCATTA
ATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAATTAGAGTTTGATTTAACA
CAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCACAACAA
CAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAGAT
AATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTGGA
CAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAAAACTT
AAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATT
TCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAA
AGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAGCTTCC
AATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCA
AGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAATTCNNAACTGAAACCTCTCAAGC
AATTGATNAAAAAAANAAAGAATAT
sequence update 2001. 6. 9
Translated Amino Acid sequence
iflffyflffliktqnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTV
YVSNISLKANTKTVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNAL
IVDKVIQVVQFTPELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPD
NERSKTSVVASIIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHI
SESAAAIKGAVVERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTVSPIVNKVS
SFGTFIKQEVQQIXN*nlssn*xkkxri


Translated Amino Acid sequence (All Frames)
Frame A:
iflffyflffliktqnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTV
YVSNISLKANTKTVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNAL
IVDKVIQVVQFTPELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPD
NERSKTSVVASIIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHI
SESAAAIKGAVVERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTVSPIVNKVS
SFGTFIKQEVQQIXN*nlssn*xkkxri


Frame B:
fsfffifyff**klktthtytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqf
mfqifh*kqilkqfqifshfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*
l*ik*fklfnlhqn*sli*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqi
mkevkplllhqllqqvivldktlplkhvklmkni*fh*nlklelklskqkqmkliitftf
lrvplplrvql*reqmhsmkdsksqvslrvqvi*slnklpi**kqpkkivqfhqs*ikfq
vlvlllnkkfnkfxtetsqaidxkxkey


Frame C:
fpfflffiffnknskqhtltqyiyyfklylnptttititttthsliyi*i*nnesrfhsl
cfkyfiesky*nsfrfflilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcin
cr*snsscsiytrirv*fnttifsttti**sqw*tttttttic*sttrrhck*rt*car*
*kk*nlcccinycsrl*cwtrrch*stss**rtydfikt*sws*scqsksk*n***pshf
*ecrch*gcscreskctr*kipnlrfl*eck*ydlstsfqfnessrrk*ysftnrk*sfk
fwyfy*trsstnsxlkplkqlxkkxkn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE671 (CFE671Q) /CSM/CF/CFE6-C/CFE671Q.Seq.d/ 942 0.0
VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/ 932 0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/ 932 0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/ 932 0.0
VFJ841 (VFJ841Q) /CSM/VF/VFJ8-B/VFJ841Q.Seq.d/ 932 0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/ 932 0.0
VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/ 932 0.0
VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/ 932 0.0
CFK424 (CFK424Q) /CSM/CF/CFK4-A/CFK424Q.Seq.d/ 932 0.0
CFD434 (CFD434Q) /CSM/CF/CFD4-B/CFD434Q.Seq.d/ 932 0.0

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence. 46 8e-08 11
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 40 2e-06 19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 1e-04 16
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 36 2e-04 12
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. 40 3e-04 13
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence. 38 4e-04 15
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 34 4e-04 15
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 34 5e-04 15
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence. 32 0.001 15
AC053544|AC053544.5 Homo sapiens chromosome 4 clone RP11-793B9, complete sequence. 42 0.002 9
dna update 2003.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ... 67 1e-09
CR855144_15(CR855144|pid:none) Oryza sativa (indica cultivar-gro... 65 3e-09
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m... 65 4e-09
BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM... 65 5e-09
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM... 65 5e-09
BT062058_1(BT062058|pid:none) Zea mays full-length cDNA clone ZM... 64 6e-09
EU962087_1(EU962087|pid:none) Zea mays clone 240116 RNA recognit... 64 6e-09
AC091811_13(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ... 64 8e-09
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c... 64 1e-08
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g... 64 1e-08
protein update 2009. 6.30
PSORT

psg: 0.84 gvh: 0.45 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for CFE671 is cyt

5' end seq. ID CFE671F
5' end seq.
>CFE671F.Seq
ATTTTCCTTTTTTTTTATTTTTTATTTTTTTTAATAAAAACTCAAAACAACACACACTTA
CACAATATATTTACTATTTTAAATTATATCTAAATCCGACAACAACAATAACAATAACAA
CAACAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGATTTCACAGTT
TATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTTTTTCTCATTT
TGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTCACAACAAGCA
ATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAACAAATGCATTA
ATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAATTAGAGTTTGATTTAACA
CAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCACAACAA
CAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAGAT
AATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTT----------
Length of 5' end seq. 589
3' end seq. ID CFE671Z
3' end seq.
>CFE671Z.Seq
----------ATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCAC
AACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGC
CAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTG
TTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAA
AACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTC
ACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCG
ATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAG
CTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAG
TTTCAAGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAATTCNNAACTGAAACCTCT
CAAGCAATTGATNAAAAAAANAAAGAATAT
Length of 3' end seq. 560
Connected seq. ID CFE671P
Connected seq.
>CFE671P.Seq
ATTTTCCTTTTTTTTTATTTTTTATTTTTTTTAATAAAAACTCAAAACAACACACACTTA
CACAATATATTTACTATTTTAAATTATATCTAAATCCGACAACAACAATAACAATAACAA
CAACAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGATTTCACAGTT
TATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTTTTTCTCATTT
TGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTCACAACAAGCA
ATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAACAAATGCATTA
ATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAATTAGAGTTTGATTTAACA
CAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCACAACAA
CAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAGAT
AATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTT----------A
TTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCACAACAACAACAA
TATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAGATAATGAA
AGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTGGACAAGAC
GCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAAAACTTAAAGTT
GGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATTTCTGAG
AGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAAAGATTC
CAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAGCTTCCAATTTA
ATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCAAGTTTT
GGTACTTTTATTAAACAAGAAGTTCAACAAATTCNNAACTGAAACCTCTCAAGCAATTGA
TNAAAAAAANAAAGAATAT
Length of connected seq. 1149
Full length Seq ID CFE671E
Full length Seq.
>CFE671E.Seq
ATTTTCCTTTTTTTTTATTTTTTATTTTTTTTAATAAAAACTCAAAACAACACACACTTA
CACAATATATTTACTATTTTAAATTATATCTAAATCCGACAACAACAATAACAATAACAA
CAACAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGATTTCACAGTT
TATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTTTTTCTCATTT
TGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTCACAACAAGCA
ATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAACAAATGCATTA
ATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAATTAGAGTTTGATTTAACA
CAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACAACCACAACAA
CAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAGAT
AATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTGGA
CAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAAAACTT
AAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATT
TCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAA
AGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAGCTTCC
AATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCA
AGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAATTCNNAACTGAAACCTCTCAAGC
AATTGATNAAAAAAANAAAGAATAT
Length of full length seq. 985