CFE647
Library CF
(Link to library)
Clone ID CFE647
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12859-1|Contig-U16301-1
Original site URL
Representative seq. ID CFE647P
(Link to Original site)
Representative DNA sequence
>CFE647 (CFE647Q) /CSM/CF/CFE6-B/CFE647Q.Seq.d/
ATTAATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGTC
TGTAACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAGC
AATTAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTAT
TAGAAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCAC
TGTTGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTT
ACGTATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAA
TGGTGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGA
TGGTAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAAT
CACTGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGC
CGCCACTGGTAGTGAAGATTTTGCAGTCAATTGGTTCGAAGGTCCACCATTCAAATTCCA
XXXXXXXXXXCAAATTACCTCAATTANAATCAAATGGTGATCAAACTCATTACTTGCGCT
ATGGATGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAAACNTATGGTGAAAGTATTGG
TGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTNTGGTGATGTTGTCGTTGCTGTCTCAAT
GAAAACCATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGA
ACCAACCTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGAT
TCACGTTTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCG
TGGTGCTATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTC
AAATCGTGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCA
TACCGCTCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTC
ACTCGATTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGT
TAAAAACTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATGAAATTTT
CTCTGCAGGTAAGAAGGTGCNATTAAAATTNNAAATGTATCAAANTAAAAAAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
LIFVFIYLFIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIII
RNVKNPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLN
GAILDIAWTSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRA
ATGSEDFAVNWFEGPPFKF---

---NYLNXNQMVIKLITCAMDDSVKISSISKKNXW*kywcr*ssssccflw*ccrcclne
nhlch*rw*nrftncchlgtnlcchq*y*sfsrw*r*qdsrfhsqw*qfncqsyfr*ssw
cyyrsfiltmw*ifsfrlfks*syrlew*rsqi*rlg*pyrsy*ccrlv**f*icclcft
rfsnlhlec*ksnrftsss*klsfrwcq*cylwfkq*nflcr*egaikixnvsx*kk


Translated Amino Acid sequence (All Frames)
Frame A:
infciyifiylyk*tthynvcnfkkyyctntsnysw*issn*w*pkg*kycickw*qyyy
*kckesngsryll*tsmsnhcckvctkw*lyckw*csr*ftylgyitkgtylksnlqsie
wcnp*ycmdir*stfscsw*w*reiwcshplg*wfimw*nhwslkddsll*h*inssiqs
rhw**rfcsqlvrrstiqip---

---qitsixikw*snsllalwmivlksqvslkktygesigvdspaqavafxgdvvvavsm
ktiyvikggkivsqtaatweptsvaindtevsvggkdnkihvftlsgnnltashtldnhr
gaitdlsyspcgkylasgcsnrevivwsgkeakskgwvnhtarinavawsndskfvasas
ldsqiyiwnvenptaspvqvknshlggvndviygsnneifsagkkvxlkxxmyqxkkk

Frame B:
LIFVFIYLFIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIII
RNVKNPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLN
GAILDIAWTSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRA
ATGSEDFAVNWFEGPPFKF---

---klpqlxsngdqthylryg**c*nlkyl*kkxmvkvlv*ivqlklllsxvmlsllsq*
kpfmslkvvksfhkllplgnqpllpsmilkfqsvvkitrftfslsvvti*lpvil*iiiv
vllpifhthhvvni*lqvvqivklsfgvvkkpnlkvgltiplvlmlslglmilnllpllh
silkftfgmlkiqplhqfklktli*vvsmmlfmvqtmkfslqvrrcx*nxkcikxkkn

Frame C:
*flylyiylfi*inytl*cl*l*killhqhqqllvvnq*qlmvtqrvkilymqvvavlll
em*riqw*qiftmnihvkpllqsmhqvviilqvvmfkviyvfgihykrnis*kqltky*m
vqslilhghqiinv*l*lvmvkrdlvqpsfgivvhhvvkslvtqr*fslvtlnqlvhsep
plvvkilqsigskvhhsns---

---NYLNXNQMVIKLITCAMDDSVKISSISKKNXW*kywcr*ssssccflw*ccrcclne
nhlch*rw*nrftncchlgtnlcchq*y*sfsrw*r*qdsrfhsqw*qfncqsyfr*ssw
cyyrsfiltmw*ifsfrlfks*syrlew*rsqi*rlg*pyrsy*ccrlv**f*icclcft
rfsnlhlec*ksnrftsss*klsfrwcq*cylwfkq*nflcr*egaikixnvsx*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE647 (CFE647Q) /CSM/CF/CFE6-B/CFE647Q.Seq.d/ 2371 0.0
CHL844 (CHL844Q) /CSM/CH/CHL8-B/CHL844Q.Seq.d/ 1235 0.0
SFH157 (SFH157Q) /CSM/SF/SFH1-C/SFH157Q.Seq.d/ 1225 0.0
SFH724 (SFH724Q) /CSM/SF/SFH7-A/SFH724Q.Seq.d/ 1221 0.0
CHB782 (CHB782Q) /CSM/CH/CHB7-D/CHB782Q.Seq.d/ 1221 0.0
CFJ887 (CFJ887Q) /CSM/CF/CFJ8-D/CFJ887Q.Seq.d/ 1221 0.0
CFJ140 (CFJ140Q) /CSM/CF/CFJ1-B/CFJ140Q.Seq.d/ 1221 0.0
CHD430 (CHD430Q) /CSM/CH/CHD4-B/CHD430Q.Seq.d/ 1215 0.0
CHB378 (CHB378Q) /CSM/CH/CHB3-D/CHB378Q.Seq.d/ 1215 0.0
CFF366 (CFF366Q) /CSM/CF/CFF3-C/CFF366Q.Seq.d/ 1215 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36936|U36936.1 Dictyostelium discoideum WD40 repeat protein 2 mRNA, compete cds. 1122 0.0 3
AF045085|AF045085.1 Drosophila subsaltans cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds. 38 0.050 3
AF474077|AF474077.1 Drosophila ananassae cytochrome oxidase II (COII) gene, partial cds; mitochondrial gene for mitochondrial product. 34 0.18 3
AF045084|AF045084.1 Drosophila sturtevanti 14043-0871.9 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds. 38 0.32 2
AF045083|AF045083.1 Drosophila sturtevanti 14043-0871.2 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds. 38 0.32 2
AF045082|AF045082.1 Drosophila sturtevanti 14045-0901.0 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds. 38 0.32 2
AF461281|AF461281.1 Drosophila eugracilis cytochrome oxidase II (COII) gene, partial cds; mitochondrial gene for mitochondrial product. 38 0.69 2
AY162976|AY162976.1 Drosophila polymorpha isolate H48 cytochrome oxidase subunit II (COII) gene, partial cds; mitochondrial gene for mitochondrial product. 38 0.83 2
AC127566|AC127566.3 Mus musculus BAC clone RP24-187F3 from chromosome 5, complete sequence. 38 0.96 7
AF423987|AF423987.1 Apteropanorpa evansi cytochrome oxidase subunit 2 (COII) gene, partial cds; mitochondrial gene for mitochondrial product. 38 1.1 2
dna update 2004. 3. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36936_1(U36936|pid:none) Dictyostelium discoideum WD40 repeat p... 371 e-101
(P90587) RecName: Full=66 kDa stress protein; AltName: Full=p66;... 277 5e-73
BT045059_1(BT045059|pid:none) Salmo salar clone ssal-rgf-510-334... 234 7e-60
AY394939_1(AY394939|pid:none) Danio rerio clone RK046A1C09 WD re... 233 1e-59
(O93277) RecName: Full=WD repeat-containing protein 1; AltName: ... 232 2e-59
AB084171_1(AB084171|pid:none) Cavia porcellus WDR1 mRNA for WD r... 231 4e-59
(Q5RKI0) RecName: Full=WD repeat-containing protein 1; &AY98648... 230 7e-59
(O75083) RecName: Full=WD repeat-containing protein 1; AltName: ... 230 7e-59
AK004858_1(AK004858|pid:none) Mus musculus adult male liver cDNA... 230 9e-59
CR860191_1(CR860191|pid:none) Pongo abelii mRNA; cDNA DKFZp469E0... 230 9e-59
protein update 2009. 5.13
PSORT

psg: 0.98 gvh: 0.37 alm: 0.29 top: 0.63 tms: 0.07 mit: 0.30 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: cytoplasmic
24.0 %: mitochondrial
20.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CFE647 is cyt

5' end seq. ID CFE647F
5' end seq.
>CFE647F.Seq
ATTAATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGTC
TGTAACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAGC
AATTAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTAT
TAGAAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCAC
TGTTGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTT
ACGTATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAA
TGGTGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGA
TGGTAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAAT
CACTGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGC
CGCCACTGGTAGTGAAGATTTTGCAGTCAATTGGTTCGAAGGTCCACCATTCAAATTCCA
----------
Length of 5' end seq. 600
3' end seq. ID CFE647Z
3' end seq.
>CFE647Z.Seq
----------CAAATTACCTCAATTANAATCAAATGGTGATCAAACTCATTACTTGCGCT
ATGGATGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAAACNTATGGTGAAAGTATTGG
TGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTNTGGTGATGTTGTCGTTGCTGTCTCAAT
GAAAACCATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGA
ACCAACCTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGAT
TCACGTTTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCG
TGGTGCTATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTC
AAATCGTGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCA
TACCGCTCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTC
ACTCGATTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGT
TAAAAACTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATGAAATTTT
CTCTGCAGGTAAGAAGGTGCNATTAAAATTNNAAATGTATCAAANTAAAAAAAAAT
Length of 3' end seq. 706
Connected seq. ID CFE647P
Connected seq.
>CFE647P.Seq
ATTAATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGTC
TGTAACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAGC
AATTAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTAT
TAGAAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCAC
TGTTGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTT
ACGTATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAA
TGGTGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGA
TGGTAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAAT
CACTGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGC
CGCCACTGGTAGTGAAGATTTTGCAGTCAATTGGTTCGAAGGTCCACCATTCAAATTCCA
----------CAAATTACCTCAATTANAATCAAATGGTGATCAAACTCATTACTTGCGCT
ATGGATGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAAACNTATGGTGAAAGTATTGG
TGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTNTGGTGATGTTGTCGTTGCTGTCTCAAT
GAAAACCATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGA
ACCAACCTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGAT
TCACGTTTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCG
TGGTGCTATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTC
AAATCGTGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCA
TACCGCTCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTC
ACTCGATTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGT
TAAAAACTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATGAAATTTT
CTCTGCAGGTAAGAAGGTGCNATTAAAATTNNAAATGTATCAAANTAAAAAAAAAT
Length of connected seq. 1306
Full length Seq ID -
Full length Seq. -
Length of full length seq. -