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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE626
Library CF
(Link to library)
Clone ID CFE626
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15938-1
Original site URL
Representative seq. ID CFE626P
(Link to Original site)
Representative DNA sequence 
>CFE626 (CFE626Q) /CSM/CF/CFE6-B/CFE626Q.Seq.d/
CTGGAAAAAAAACAAACAACAACAACAATCTCTTTTTTTGATTATTTCATTTTTCATATA
AAAAAGACTTAAAAAACAAATAAATAAATAAATAAACTATTTTAAAAAGCCATCTTTTTA
CTTTATTGTAATTTATTATTTGTTTCGTTTTGAGAATTTTGCGTAGCAAAATTTTCAAAA
AAAAAGCAAAAAATAATCAGATCGAAAAAAACAAACAACAACAACAATCTCTTTTTTTGA
TTATTTCATTTTTCATATAAAAAAGACTTAAAAAACAAATAAATAAATAAATAAACTATT
TTAAAAAGCCATCTTTTTACTTTATTGGAATTTATTATTTGTTTCGTTTTGNGAATTTTG
CGTAGCAAAATTTTCAAAAAAAAAGCAAAAAATAATCAGATCGAAAAAAACAAACGACAA
CCCCCAATCTCTTTTTTNGGATATTTCATTTTTCATNTAAAAAAGACTTTNNAAANANNA
XXXXXXXXXXAAAAAAACAAACAGCAACAACAATCTCTTTTTTTGATTATTTCATTTTTC
ATATAAAAAAGNCTTNAAAAACCAATAAATNAATANATNAGCTCTTTTAAAAAGCCATCT
TTTTNCTTTANTGTAATTNATTATTTGNTTCGTTTTGAGAANTTTGNGTAGCAAAATTTT
CAAAAAAAAAGCAANAAATAATCAGNTCGAAAAAAACAANCNNCAACAACAATCTCTTTT
TTTGATTANTTCATTTTTCATATANAAAAGGCTTAAAAGAACNAATAAATAAATNAATTA
NCTATTTTAAAAAGCCATCNTNTNNCTTTATTGTAANTTATTANTTGTTTCGTCTTNAGC
GNTNCGCGTANCAAAANTNTCCAAANNGAAGCANAAAANAACCAGATCGACNACAACANA
CGACCNCAACNATCTCCTTTTTTNNNATTTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lekkqttttisffdyfifhikkt*ktnk*inklf*kaifllycnllfvsf*efcvakfsk
kkqkiirskktnnnnnlff*lfhfsykkdlknk*ink*TILKSHLFTLLEFIICFVLXIL
RSKIFKKKAKNNQIEKNKRQPPISFXGYFIFHXKKTXXXX---

---KKQTATTISFFDYFIFHIKKXXKTNKXIXXLF*kaifxlxcnxlfxsf*exxvakfs
kkkqxiixskktxxnnnlff*lxhfsyxkglkexinkxixyfkkpsxxfivxyxlfrlxr
xaxqxxpxxsxkxpdrxqxttxtisffxis
Translated Amino Acid sequence (All Frames) 
Frame A:
lekkqttttisffdyfifhikkt*ktnk*inklf*kaifllycnllfvsf*efcvakfsk
kkqkiirskktnnnnnlff*lfhfsykkdlknk*ink*TILKSHLFTLLEFIICFVLXIL
RSKIFKKKAKNNQIEKNKRQPPISFXGYFIFHXKKTXXXX---

---kktnsnnnlff*lfhfsykkxxknq*xnxxallkshlfxlx*xiixfvlrxlxskif
kkkaxnnqxeknxxqqqslflixsffixkrlkrtnk*xnxlf*kaixxlycxllxvssxa
xrvxkxskxkxkxtrstttxdxnxllfxxf

Frame B:
wkknkqqqqslfliisffi*krlkkqink*inyfkkpsfyfiviyylfrfenfa*qnfqk
kskk*sdrkkqttttisffdyfifhikkt*ktnk*inklf*kaifllywnllfvsfxefc
vakfskkkqkiirskktndnpqslfxdisffx*krlxkx---

---KKQTATTISFFDYFIFHIKKXXKTNKXIXXLF*kaifxlxcnxlfxsf*exxvakfs
kkkqxiixskktxxnnnlff*lxhfsyxkglkexinkxixyfkkpsxxfivxyxlfrlxr
xaxqxxpxxsxkxpdrxqxttxtisffxis

Frame C:
gkktnnnnnlff*lfhfsykkdlknk*ink*tilkshlftll*fiicfvlrilrskifkk
kaknnqieknkqqqqslfliisffi*krlkkqink*inyfkkpsfyfigiyylfrfxnfa
*qnfqkkskk*sdrkkqtttpnlffxifhfsxkkdfxxx---

---knkqqqqslfliisffi*kxlxkpinxxxssfkkpsfxfxvixylxrfexfx*qnfq
kksxk*sxrkkqxxttisffdxfifhixka*knx*inxlxilkshxxxll*xixcfvxsx
xrxkxxqxeaxxnqidxnxrpqxspfxxf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE626 (CFE626Q) /CSM/CF/CFE6-B/CFE626Q.Seq.d/                        422   e-117
VHL576 (VHL576Q) /CSM/VH/VHL5-D/VHL576Q.Seq.d/                        268   1e-70
VSF182 (VSF182Q) /CSM/VS/VSF1-D/VSF182Q.Seq.d/                        260   3e-68
VHC487 (VHC487Q) /CSM/VH/VHC4-D/VHC487Q.Seq.d/                        252   8e-66
AFH421 (AFH421Q) /CSM/AF/AFH4-A/AFH421Q.Seq.d/                        242   8e-63
SFH135 (SFH135Q) /CSM/SF/SFH1-B/SFH135Q.Seq.d/                        218   1e-55
VSI714 (VSI714Q) /CSM/VS/VSI7-A/VSI714Q.Seq.d/                        210   3e-53
VSF509 (VSF509Q) /CSM/VS/VSF5-A/VSF509Q.Seq.d/                        186   4e-46
VSC735 (VSC735Q) /CSM/VS/VSC7-B/VSC735Q.Seq.d/                        186   4e-46
VFI338 (VFI338Q) /CSM/VF/VFI3-B/VFI338Q.Seq.d/                        186   4e-46
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY293825|AY293825.1 Dictyostelium discoideum transposon cluster; tRNA-Leu gene, 5S ribosomal RNA pseudogene, and tRNA-Ser gene, complete sequence.   182   e-134  13
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   174   e-127  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   174   e-121  15
X57034|X57034.1 D.discoideum retrotransposon DRE.                 174   4e-96  9
M24565|M24565.1 Dictyostelium discoideum tRNA-Glu-GAA gene, clone yGluGAA1.   182   1e-90  7
M24064|M24064.1 D.discoideum Val-tRNA gene, clone lambda-ValGUU13.   174   3e-88  7
M24058|M24058.1 D.discoideum Val-tRNA gene, clone lambda-ValGUU6.   174   1e-85  7
X59582|X59582.1 D. discoideum tRNA-Ser (AGA) 1 gene.              182   8e-85  6
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   182   3e-71  14
M24913|M24913.1 D.discoideum mobile genetic element DRE1b.        182   3e-54  5
dna update 2004. 3. 5
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 729,263,048
protein update 2009. 5.13
PSORT 

 psg: 0.78  gvh: 0.54  alm: 0.24  top: 0.77  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFE626 is nuc
5' end seq. ID CFE626F
5' end seq. 
>CFE626F.Seq
CTGGAAAAAAAACAAACAACAACAACAATCTCTTTTTTTGATTATTTCATTTTTCATATA
AAAAAGACTTAAAAAACAAATAAATAAATAAATAAACTATTTTAAAAAGCCATCTTTTTA
CTTTATTGTAATTTATTATTTGTTTCGTTTTGAGAATTTTGCGTAGCAAAATTTTCAAAA
AAAAAGCAAAAAATAATCAGATCGAAAAAAACAAACAACAACAACAATCTCTTTTTTTGA
TTATTTCATTTTTCATATAAAAAAGACTTAAAAAACAAATAAATAAATAAATAAACTATT
TTAAAAAGCCATCTTTTTACTTTATTGGAATTTATTATTTGTTTCGTTTTGNGAATTTTG
CGTAGCAAAATTTTCAAAAAAAAAGCAAAAAATAATCAGATCGAAAAAAACAAACGACAA
CCCCCAATCTCTTTTTTNGGATATTTCATTTTTCATNTAAAAAAGACTTTNNAAANANNA
----------
Length of 5' end seq. 480
3' end seq. ID CFE626Z
3' end seq. 
>CFE626Z.Seq
----------AAAAAAACAAACAGCAACAACAATCTCTTTTTTTGATTATTTCATTTTTC
ATATAAAAAAGNCTTNAAAAACCAATAAATNAATANATNAGCTCTTTTAAAAAGCCATCT
TTTTNCTTTANTGTAATTNATTATTTGNTTCGTTTTGAGAANTTTGNGTAGCAAAATTTT
CAAAAAAAAAGCAANAAATAATCAGNTCGAAAAAAACAANCNNCAACAACAATCTCTTTT
TTTGATTANTTCATTTTTCATATANAAAAGGCTTAAAAGAACNAATAAATAAATNAATTA
NCTATTTTAAAAAGCCATCNTNTNNCTTTATTGTAANTTATTANTTGTTTCGTCTTNAGC
GNTNCGCGTANCAAAANTNTCCAAANNGAAGCANAAAANAACCAGATCGACNACAACANA
CGACCNCAACNATCTCCTTTTTTNNNATTTCA
Length of 3' end seq. 442
Connected seq. ID CFE626P
Connected seq. 
>CFE626P.Seq
CTGGAAAAAAAACAAACAACAACAACAATCTCTTTTTTTGATTATTTCATTTTTCATATA
AAAAAGACTTAAAAAACAAATAAATAAATAAATAAACTATTTTAAAAAGCCATCTTTTTA
CTTTATTGTAATTTATTATTTGTTTCGTTTTGAGAATTTTGCGTAGCAAAATTTTCAAAA
AAAAAGCAAAAAATAATCAGATCGAAAAAAACAAACAACAACAACAATCTCTTTTTTTGA
TTATTTCATTTTTCATATAAAAAAGACTTAAAAAACAAATAAATAAATAAATAAACTATT
TTAAAAAGCCATCTTTTTACTTTATTGGAATTTATTATTTGTTTCGTTTTGNGAATTTTG
CGTAGCAAAATTTTCAAAAAAAAAGCAAAAAATAATCAGATCGAAAAAAACAAACGACAA
CCCCCAATCTCTTTTTTNGGATATTTCATTTTTCATNTAAAAAAGACTTTNNAAANANNA
----------AAAAAAACAAACAGCAACAACAATCTCTTTTTTTGATTATTTCATTTTTC
ATATAAAAAAGNCTTNAAAAACCAATAAATNAATANATNAGCTCTTTTAAAAAGCCATCT
TTTTNCTTTANTGTAATTNATTATTTGNTTCGTTTTGAGAANTTTGNGTAGCAAAATTTT
CAAAAAAAAAGCAANAAATAATCAGNTCGAAAAAAACAANCNNCAACAACAATCTCTTTT
TTTGATTANTTCATTTTTCATATANAAAAGGCTTAAAAGAACNAATAAATAAATNAATTA
NCTATTTTAAAAAGCCATCNTNTNNCTTTATTGTAANTTATTANTTGTTTCGTCTTNAGC
GNTNCGCGTANCAAAANTNTCCAAANNGAAGCANAAAANAACCAGATCGACNACAACANA
CGACCNCAACNATCTCCTTTTTTNNNATTTCA
Length of connected seq. 922
Full length Seq ID -
Full length Seq. -
Length of full length seq. -