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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE611
Library CF
(Link to library)
Clone ID CFE611
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID CFE611P
(Link to Original site)
Representative DNA sequence 
>CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGXXXXXXXXXXTG
ATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATT
CTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTA
GTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAA
AAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACC
ATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAAT
TAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAAT
TCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGG
AACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCAT
CCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTAC
CAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTG
GTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTATACCAACTTCAA
CAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAAG
AAAATAATAAAAAAAATAAAGACAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSM---

---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ
HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE
PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC
NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINI
SF*ennkknkd
Translated Amino Acid sequence (All Frames) 
Frame A:
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSM---

---*sn*fsfirny*l*fnssfkf****y***w*y***rinkk*www**i**qi*ksktt
t**kr**skw***q****kfk*kpyck***iyitii*lssfr*irkgkretrl*nhl*y*
tn*ihwpk*riig*ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm
*lctrtrll*ilinlfkv*ckiywfgkvtiyd*sk*illytnfnnfnld*ssfkkefnqy
fflrk**kk*rh

Frame B:
lmqk*iiiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfq---

---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ
HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE
PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC
NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINI
SF*ennkknkd

Frame C:
*cknel*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifn---

---ikli*ly*kllimiqfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnn
mmkkimkqvvvvtimmmki*iktil*ivvnlhhhhliiii*mn*krkernkimksfviln
qlnslakmkdywvkilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nv
tlyqnqvtlnph*sfqslmqnllvw*shni*liqiniivyqlqqf*lglvkfqkriqsif
lfkkiikkikt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1645   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1447   0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1447   0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/                       1439   0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/                       1439   0.0
AFB247 (AFB247Q) /CSM/AF/AFB2-B/AFB247Q.Seq.d/                       1409   0.0
AFE485 (AFE485Q) /CSM/AF/AFE4-D/AFE485Q.Seq.d/                       1405   0.0
CFI603 (CFI603Q) /CSM/CF/CFI6-A/CFI603Q.Seq.d/                       1403   0.0
AFB392 (AFB392Q) /CSM/AF/AFB3-D/AFB392Q.Seq.d/                       1386   0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/                       1382   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   5e-23  26
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   3e-19  23
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    40   3e-14  20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   5e-14  24
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50   6e-14  25
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    52   2e-13  19
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   3e-13  22
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    42   2e-12  18
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   2e-12  24
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    42   5e-12  18
dna update 2004. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    47   9e-04
(P95994) RecName: Full=UPF0103 protein SSO0066;  &AE006641_61(AE...    34   7.6
CP000102_43(CP000102|pid:none) Methanosphaera stadtmanae DSM 309...    34   7.6
protein update 2009. 5.13
PSORT 

 psg: 0.47  gvh: 0.28  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFE611 is nuc
5' end seq. ID CFE611F
5' end seq. 
>CFE611F.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATG----------
Length of 5' end seq. 168
3' end seq. ID CFE611Z
3' end seq. 
>CFE611Z.Seq
----------TGATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTC
ATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAAT
CAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAAC
AACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATT
TAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATC
ATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTG
AACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTG
GTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATA
CAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAAT
GTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATG
CAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTA
TACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATA
TTTCTTTTTAAGAAAATAATAAAAAAAATAAAGACAT
Length of 3' end seq. 747
Connected seq. ID CFE611P
Connected seq. 
>CFE611P.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATG----------TG
ATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATT
CTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTA
GTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAA
AAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACC
ATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAAT
TAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAAT
TCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGG
AACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCAT
CCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTAC
CAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTG
GTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTATACCAACTTCAA
CAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAAG
AAAATAATAAAAAAAATAAAGACAT
Length of connected seq. 915
Full length Seq ID -
Full length Seq. -
Length of full length seq. -