AFE540
Library AF
(Link to library)
Clone ID AFE540
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID AFE540Z
(Link to Original site)
Representative DNA sequence
>AFE540 (AFE540Q) /CSM/AF/AFE5-B/AFE540Q.Seq.d/
XXXXXXXXXXGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGC
CTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCNATGAAGCTTT
TGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACANAGTTAATCC
AAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAACANAG
CTACCATTTCAAGAGAA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---EPSIMGIGPAVAIPAALKQAGLTTKDIDVFEIXEAFASQAFYSCKVLGLDMNXVNPN
GSGIALGHPLGATGARQXSYHFKR


Translated Amino Acid sequence (All Frames)
Frame A:
---snhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*txliq
malvsl*vih*vllvpvnxatisre


Frame B:
---rtihygywssrcnssrlktswshh*ryrrf*nx*sfcfssilql*gfgfgyexs*sk
wlwyrfrssircywcpstxlpfqe


Frame C:
---EPSIMGIGPAVAIPAALKQAGLTTKDIDVFEIXEAFASQAFYSCKVLGLDMNXVNPN
GSGIALGHPLGATGARQXSYHFKR


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFE540 (AFE540Q) /CSM/AF/AFE5-B/AFE540Q.Seq.d/ 472 e-132
VSJ840 (VSJ840Q) /CSM/VS/VSJ8-B/VSJ840Q.Seq.d/ 448 e-125
VSH806 (VSH806Q) /CSM/VS/VSH8-A/VSH806Q.Seq.d/ 448 e-125
VHE451 (VHE451Q) /CSM/VH/VHE4-C/VHE451Q.Seq.d/ 448 e-125
VFN260 (VFN260Q) /CSM/VF/VFN2-C/VFN260Q.Seq.d/ 448 e-125
VFN216 (VFN216Q) /CSM/VF/VFN2-A/VFN216Q.Seq.d/ 448 e-125
VFM101 (VFM101Q) /CSM/VF/VFM1-A/VFM101Q.Seq.d/ 448 e-125
VFL724 (VFL724Q) /CSM/VF/VFL7-A/VFL724Q.Seq.d/ 448 e-125
VFL606 (VFL606Q) /CSM/VF/VFL6-A/VFL606Q.Seq.d/ 448 e-125
VFK696 (VFK696Q) /CSM/VF/VFK6-D/VFK696Q.Seq.d/ 448 e-125

own update 2002. 9.16
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 434 e-119 2
AX619566|AX619566.1 Sequence 2529 from Patent WO02094868. 52 2e-07 3
AY033081|AY033081.1 Staphylococcus aureus putative fatty acid degradation operon, complete sequence. 52 1e-05 3
AX768437|AX768437.1 Sequence 23 from Patent WO03011899. 52 1e-05 3
BM412583|BM412583.1 EST586910 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG60D11 5' end, mRNA sequence. 58 5e-05 1
AW649114|AW649114.1 EST327568 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI7M3 5', mRNA sequence. 58 5e-05 1
AI488943|AI488943.1 EST247282 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED18N11, mRNA sequence. 58 5e-05 1
BM536267|BM536267.1 EST589289 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG72O5 5' end, mRNA sequence. 58 5e-05 1
BM535093|BM535093.1 EST588115 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG64D19 5' end, mRNA sequence. 58 5e-05 1
AW029793|AW029793.1 EST273048 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC11A19 similar to acetyl-CoA C-acyltransferase, putative, mRNA sequence. 58 5e-05 1
dna update 2003. 8.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 146 2e-34
AK220781_1(AK220781|pid:none) Arabidopsis thaliana mRNA for pero... 111 6e-24
AK230209_1(AK230209|pid:none) Arabidopsis thaliana mRNA for pero... 111 6e-24
AF062589_2(AF062589|pid:none) Arabidopsis thaliana 3-keto-acyl-C... 111 6e-24
AY038061_1(AY038061|pid:none) Gossypium hirsutum 3-ketoacyl-CoA ... 109 2e-23
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C... 106 3e-22
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM... 106 3e-22
BC054299_1(BC054299|pid:none) Xenopus laevis acetyl-Coenzyme A a... 105 6e-22
BC124019_1(BC124019|pid:none) Xenopus tropicalis hypothetical pr... 105 6e-22
M32801_1(M32801|pid:none) Rat 3-ketoacyl-CoA thiolase 2 mRNA, co... 104 1e-21
protein update 2009. 4.18
PSORT

psg: 0.75 gvh: 0.46 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for AFE540 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFE540Z
3' end seq.
>AFE540Z.Seq
----------GTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGC
CTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCNATGAAGCTTT
TGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACANAGTTAATCC
AAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAACANAG
CTACCATTTCAAGAGAA
Length of 3' end seq. 247
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -