CFE579
Library CF
(Link to library)
Clone ID CFE579
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U00783-1
Original site URL
Representative seq. ID CFE579P
(Link to Original site)
Representative DNA sequence
>CFE579 (CFE579Q) /CSM/CF/CFE5-D/CFE579Q.Seq.d/
TTTTATGATGCTGGAGAAAGATCAAGGCAATTATTTGAAAATATTTCTCATATTAATCAN
GTTTCATTAGTTTTATTAATATTAAATATAGATCTAAATAAAACATCACCAACAATAAAC
TTAATTGGCGAAAAAACATTTGGAGATTTAAAAAATTATTGNTCTTTTAATATTGATTTT
CAAGATATTAATGGAAATAAAATCAAAGAGTCAGAANTAAAGAAAAAACCATTATTAATA
ATTGATGGGAAATCAGTTTCAAGATCATTTATAAAATATGTTGGATTTGAAAATAATACT
TTATGTAATAAAAAATTAATATCAATTAATAATTTATTATTCAAAGATTGGAGTTCAACA
TTAGTATTTTCAAATTCATTACTAANATAAACCTTATCATTCTTTAGATTTTTATTTTTC
ATCAATAACAXXXXXXXXXXTTTAAAATTCACCATTCCAATCATTTTTCAAGTGCANTTA
TAATGNATAATGGTTTTATTGATTTAAAATCAAATTCAAGAATTGATACTCAACCAACAA
TCAAAGGAACAAATAATTTAATACCCATTGATAAATATTCATCATTAAATTTAAATTTAG
AAAAGTTTAAAAAAGATTGTTTAAAATGTATAGTTAATCTTTTTGACAATAGTGAAANCA
GCGATGATTTAGTAACAAAAAATAATAAAATTCATAAATTTGATAGAGGTGATTTGATTA
AAAAAATAATTGTTCCAGTTTTGATTTGTTCAATTACAATTTCTATATTTATTTTGGTGG
CCATTTTTAGGAAAAATATTAAATTGTATTTTGAAAATCTTAAATCTCCAAATAATGGTA
ATGTTAGTAACAATAGTATAAATAACAATAATAATGTAAATGGTAATTATTTATCAGATA
TAATAGAATACGAATATGGAGAATCAGTTGAAGGATTATTCTCTAATCAAACATCGTGTG
ATAATCCTCATACATGTCCATCAAGTTCAAGCCATATCGATCATATTTGCTGTGCTTGNA
TAAAAATAACGGATGCTCCAGTAATTAGNATAAT
sequence update 2003. 5. 2
Translated Amino Acid sequence
fmmlekdqgnylkiflilixfh*fy*y*i*i*ikhhqq*t*lakkhlei*kiixllilif
kilmeiksksqx*rknhy**lmgnqfqdhl*nmldlkiilyvikn*yqliiyyskigvqh
*yfqihy*XKPYHSLDFYFSSIT---

---FKIHHSNHFSSAXIMXNGFIDLKSNSRIDTQPTIKGTNNLIPIDKYSSLNLNLEKFK
KDCLKCIVNLFDNSEXSDDLVTKNNKIHKFDRGDLIKKIIVPVLICSITISIFILVAIFR
KNIKLYFENLKSPNNGNVSNNSINNNNNVNGNYLSDIIEYEYGESVEGLFSNQTSCDNPH
TCPSSSSHIDHICCAXIKITDAPVIXI


Translated Amino Acid sequence (All Frames)
Frame A:
fydagersrqlfenishinxvslvllilnidlnktsptinligektfgdlknyxsfnidf
qdingnkikesexkkkplliidgksvsrsfikyvgfenntlcnkklisinnllfkdwsst
lvfsnsllx*tlsffrflffinn---

---FKIHHSNHFSSAXIMXNGFIDLKSNSRIDTQPTIKGTNNLIPIDKYSSLNLNLEKFK
KDCLKCIVNLFDNSEXSDDLVTKNNKIHKFDRGDLIKKIIVPVLICSITISIFILVAIFR
KNIKLYFENLKSPNNGNVSNNSINNNNNVNGNYLSDIIEYEYGESVEGLFSNQTSCDNPH
TCPSSSSHIDHICCAXIKITDAPVIXI

Frame B:
fmmlekdqgnylkiflilixfh*fy*y*i*i*ikhhqq*t*lakkhlei*kiixllilif
kilmeiksksqx*rknhy**lmgnqfqdhl*nmldlkiilyvikn*yqliiyyskigvqh
*yfqihy*XKPYHSLDFYFSSIT---

---lkftipiifqvxl*ximvlli*nqiqelilnqqskeqii*yplinihh*i*i*kslk
kiv*nv*lifltivkxami**qkiikfinlievi*lkk*lfqf*fvqlqflylfwwpflg
kilncilkilnlqimvmlvtiv*itiim*mviiyqi**ntnmenqlkdyslikhrviili
hvhqvqaisiifavlx*k*rmlq*lx*

Frame C:
l*cwrkikaii*kyfsy*sxfisfinikyrsk*nitnnklnwrkniwrfkkllxf*y*fs
ry*wk*nqrvrxkektiinn*weisfkiiykicwi*k*yfm**kinin**fiiqrlefni
sifkfitxinliil*ififhq*---

---*nspfqsffkcxynx*wfy*fkikfkn*ystnnqrnk*fnth**ifiikfkfrkv*k
rlfkmys*sf*q**xqr*fsnkk**ns*i**r*fd*knncssfdlfnynfyiyfgghf*e
ky*ivf*ks*isk*w*c**q*yk*q**ckw*lfirynririwris*riil*sniv**ssy
msikfkpyrsyllclxknngcssn*xn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFE579 (CFE579Q) /CSM/CF/CFE5-D/CFE579Q.Seq.d/ 1935 0.0
SSM523 (SSM523Q) /CSM/SS/SSM5-A/SSM523Q.Seq.d/ 670 0.0
AHA823 (AHA823Q) /CSM/AH/AHA8-A/AHA823Q.Seq.d/ 60 7e-08
VSG555 (VSG555Q) /CSM/VS/VSG5-C/VSG555Q.Seq.d/ 42 0.017
SSC580 (SSC580Q) /CSM/SS/SSC5-D/SSC580Q.Seq.d/ 42 0.017
CHP688 (CHP688Q) /CSM/CH/CHP6-D/CHP688Q.Seq.d/ 42 0.017
AHJ515 (AHJ515Q) /CSM/AH/AHJ5-A/AHJ515Q.Seq.d/ 42 0.017
VSJ703 (VSJ703Q) /CSM/VS/VSJ7-A/VSJ703Q.Seq.d/ 40 0.067
VSA482 (VSA482Q) /CSM/VS/VSA4-D/VSA482Q.Seq.d/ 40 0.067
SSG455 (SSG455Q) /CSM/SS/SSG4-C/SSG455Q.Seq.d/ 40 0.067

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 714 0.0 27
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 1e-17 25
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 1e-17 28
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 38 3e-17 25
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence. 38 1e-16 21
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 2e-16 23
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 34 2e-16 26
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 40 3e-16 24
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 42 6e-16 23
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence. 34 1e-15 24
dna update 2004. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116957_106(AC116957|pid:none) Dictyostelium discoideum chromos... 311 3e-83
AM942759_2679(AM942759|pid:none) Proteus mirabilis strain HI4320... 34 7.0
CP000880_2288(CP000880|pid:none) Salmonella enterica subsp. ariz... 34 7.1
CP000679_1909(CP000679|pid:none) Caldicellulosiruptor saccharoly... 34 9.2

protein update 2009. 3.28
PSORT

psg: 0.92 gvh: 0.36 alm: 0.14 top: 0.50 tms: 0.07 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CFE579 is end

5' end seq. ID CFE579F
5' end seq.
>CFE579F.Seq
TTTTATGATGCTGGAGAAAGATCAAGGCAATTATTTGAAAATATTTCTCATATTAATCAN
GTTTCATTAGTTTTATTAATATTAAATATAGATCTAAATAAAACATCACCAACAATAAAC
TTAATTGGCGAAAAAACATTTGGAGATTTAAAAAATTATTGNTCTTTTAATATTGATTTT
CAAGATATTAATGGAAATAAAATCAAAGAGTCAGAANTAAAGAAAAAACCATTATTAATA
ATTGATGGGAAATCAGTTTCAAGATCATTTATAAAATATGTTGGATTTGAAAATAATACT
TTATGTAATAAAAAATTAATATCAATTAATAATTTATTATTCAAAGATTGGAGTTCAACA
TTAGTATTTTCAAATTCATTACTAANATAAACCTTATCATTCTTTAGATTTTTATTTTTC
ATCAATAACA----------
Length of 5' end seq. 430
3' end seq. ID CFE579Z
3' end seq.
>CFE579Z.Seq
NNNNNNNNNNTTTAAAATTCACCATTCCAATCATTTTTCAAGTGCANTTATAATGNATAA
TGGTTTTATTGATTTAAAATCAAATTCAAGAATTGATACTCAACCAACAATCAAAGGAAC
AAATAATTTAATACCCATTGATAAATATTCATCATTAAATTTAAATTTAGAAAAGTTTAA
AAAAGATTGTTTAAAATGTATAGTTAATCTTTTTGACAATAGTGAAANCAGCGATGATTT
AGTAACAAAAAATAATAAAATTCATAAATTTGATAGAGGTGATTTGATTAAAAAAATAAT
TGTTCCAGTTTTGATTTGTTCAATTACAATTTCTATATTTATTTTGGTGGCCATTTTTAG
GAAAAATATTAAATTGTATTTTGAAAATCTTAAATCTCCAAATAATGGTAATGTTAGTAA
CAATAGTATAAATAACAATAATAATGTAAATGGTAATTATTTATCAGATATAATAGAATA
CGAATATGGAGAATCAGTTGAAGGATTATTCTCTAATCAAACATCGTGTGATAATCCTCA
TACATGTCCATCAAGTTCAAGCCATATCGATCATATTTGCTGTGCTTGNATAAAAATAAC
GGATGCTCCAGTAATTAGNATAAT
Length of 3' end seq. 624
Connected seq. ID CFE579P
Connected seq.
>CFE579P.Seq
TTTTATGATGCTGGAGAAAGATCAAGGCAATTATTTGAAAATATTTCTCATATTAATCAN
GTTTCATTAGTTTTATTAATATTAAATATAGATCTAAATAAAACATCACCAACAATAAAC
TTAATTGGCGAAAAAACATTTGGAGATTTAAAAAATTATTGNTCTTTTAATATTGATTTT
CAAGATATTAATGGAAATAAAATCAAAGAGTCAGAANTAAAGAAAAAACCATTATTAATA
ATTGATGGGAAATCAGTTTCAAGATCATTTATAAAATATGTTGGATTTGAAAATAATACT
TTATGTAATAAAAAATTAATATCAATTAATAATTTATTATTCAAAGATTGGAGTTCAACA
TTAGTATTTTCAAATTCATTACTAANATAAACCTTATCATTCTTTAGATTTTTATTTTTC
ATCAATAACA----------TTTAAAATTCACCATTCCAATCATTTTTCAAGTGCANTTA
TAATGNATAATGGTTTTATTGATTTAAAATCAAATTCAAGAATTGATACTCAACCAACAA
TCAAAGGAACAAATAATTTAATACCCATTGATAAATATTCATCATTAAATTTAAATTTAG
AAAAGTTTAAAAAAGATTGTTTAAAATGTATAGTTAATCTTTTTGACAATAGTGAAANCA
GCGATGATTTAGTAACAAAAAATAATAAAATTCATAAATTTGATAGAGGTGATTTGATTA
AAAAAATAATTGTTCCAGTTTTGATTTGTTCAATTACAATTTCTATATTTATTTTGGTGG
CCATTTTTAGGAAAAATATTAAATTGTATTTTGAAAATCTTAAATCTCCAAATAATGGTA
ATGTTAGTAACAATAGTATAAATAACAATAATAATGTAAATGGTAATTATTTATCAGATA
TAATAGAATACGAATATGGAGAATCAGTTGAAGGATTATTCTCTAATCAAACATCGTGTG
ATAATCCTCATACATGTCCATCAAGTTCAAGCCATATCGATCATATTTGCTGTGCTTGNA
TAAAAATAACGGATGCTCCAGTAATTAGNATAAT
Length of connected seq. 1044
Full length Seq ID -
Full length Seq. -
Length of full length seq. -