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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE544
Library CF
(Link to library)
Clone ID CFE544
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16240-1
Original site URL
Representative seq. ID CFE544P
(Link to Original site)
Representative DNA sequence 
>CFE544 (CFE544Q) /CSM/CF/CFE5-B/CFE544Q.Seq.d/
ATTCAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTT
TAATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTC
AACAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAA
GTGATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAAT
ATTGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAAC
AATCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATC
AATTAGATCTAGATCTTTGGGATAATTTTAATATAATAGGANGGTGGTGGACCATTTGCA
CCAACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGA
TTCAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAAT
GACTTTTTCCGTTTTTCAATTATGGGTGAAATTTGGGTTTTCTTCAATAATACTNTAATA
GCTGATCGAGCTXXXXXXXXXXTCTTTGTTTAACAATTCCAATTGATTGTGCAAATTTAG
AACCAGATTGTCCAACATCTGTATGTTTTGATGGTCAATGTTCAGTTTGTGAAGTTGATT
CAAGCTCTGTTGATATTTCAACCACTGGTATAGTTACAACCACTGGCATTTCTATATCTA
CAATTGGTCCTGTATCAACAACTGATTTATCAATTTCAACAATTGGTTTTGTAACTACCA
CTGGTGTAACAGCTTCAACGATTGGCATTGTTACTACAACTGGTTTCATAACTTCAACAA
CTTCAACAACTGGTTTATTAACCACTGCTTCAACAACCTCAACAACTGGTATATTAACCA
CTGCTTCATCAACTTCAACAACGGGAATACCAACAATTTCAACATCAATTTCGACATCAG
GAGCAACAGGAACAACAACAACCCCAACAACAGGTTCCACTGGAACAATACCACCTATTG
ACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCATTATTACTGTTATCAATTAACAA
ATTCATACACTTGTATATCAAAAGAATTTTATAATAATTGTGAACCTGAAAGATTAATAT
TATTTTATTAATAATTAAAAACAAAAATAAATAAAAAACCAAATTTTAAAACTTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iqytpksii*n**y*ylllf**tmflvnlvmmmvd*dqylnn***eilnliviqilesd*
vmil*lvlcnqpwemikdqnivvakilslmikef*l*mmnnplingsivmifvqiif*vi
n*i*ifgiili**XGGGPFAPTDGVGFGDPNLFPEYASDRFNQYHCFELHLSYIPLDEYN
DFFRFSIMGEIWVFFNNTXIADRA---

---LCLTIPIDCANLEPDCPTSVCFDGQCSVCEVDSSSVDISTTGIVTTTGISISTIGPV
STTDLSISTIGFVTTTGVTASTIGIVTTTGFITSTTSTTGLLTTASTTSTTGILTTASST
STTGIPTISTSISTSGATGTTTTPTTGSTGTIPPIDLAKCSHDSCPPHYYCYQLTNSYTC
ISKEFYNNCEPERLILFY**lktkinkkpnfktl
Translated Amino Acid sequence (All Frames) 
Frame A:
iqytpksii*n**y*ylllf**tmflvnlvmmmvd*dqylnn***eilnliviqilesd*
vmil*lvlcnqpwemikdqnivvakilslmikef*l*mmnnplingsivmifvqiif*vi
n*i*ifgiili**XGGGPFAPTDGVGFGDPNLFPEYASDRFNQYHCFELHLSYIPLDEYN
DFFRFSIMGEIWVFFNNTXIADRA---

---slfnnsn*lckfrtrlsnicmf*wsmfsl*s*fklc*yfnhwysynhwhfyiynwsc
inn*finfnnwfcnyhwcnsfndwhcyynwfhnfnnfnnwfinhcfnnlnnwyinhcfin
fnngntnnfninfdirsnrnnnnpnnrfhwnntty*pckm*s*flptsllllsinkfihl
yikril**l*t*kiniilliiknknk*ktkf*nf

Frame B:
fnilpnq*yeinniniyyyfnklcfwsi****w*iktntstinnkkf*t*s*srfwnpik
**scnwyyatnlgr**ktkillwrkscr**srsfnck**til**mvq***slfklffkls
irsrslg*f*ynrxvvdhlhqlmvldlvtliyslsmqvidsisiivlsfishifhsmnim
tfsvfqlwvkfgfssiil**lie---

---LCLTIPIDCANLEPDCPTSVCFDGQCSVCEVDSSSVDISTTGIVTTTGISISTIGPV
STTDLSISTIGFVTTTGVTASTIGIVTTTGFITSTTSTTGLLTTASTTSTTGILTTASST
STTGIPTISTSISTSGATGTTTTPTTGSTGTIPPIDLAKCSHDSCPPHYYCYQLTNSYTC
ISKEFYNNCEPERLILFY**lktkinkkpnfktl

Frame C:
siysqinnmkliilifiiilinyvfgqssdddgrlrpipqqliirnfkpdrnpdfgirls
ddlvtgimqptlgddkrpkyccgenpvvddqgvlivndeqsfnkwfnsddlcsnyflsyq
ldldlwdnfniigxwwtictn*wcwiw*p*sip*vck*siqsvslf*assliystr*i**
lfpffnyg*nlgflq*yxns*ss---

---fv*qfqlivqi*nqivqhlyvlmvnvqfvkliqallifqplv*lqplaflylqlvly
qqliyqfqqlvl*lplv*qlqrlalllqlvs*lqqlqqlvy*pllqqpqqlvy*pllhql
qqreyqqfqhqfrhqeqqeqqqpqqqvpleqyhlltlqnvvmilahliitvin*qihtlv
yqknfiiivnlkd*yyfinn*kqk*iknqilkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE544 (CFE544Q) /CSM/CF/CFE5-B/CFE544Q.Seq.d/                       2210   0.0
SFJ534 (SFJ534Q) /CSM/SF/SFJ5-B/SFJ534Q.Seq.d/                       1176   0.0
SFE249 (SFE249Q) /CSM/SF/SFE2-C/SFE249Q.Seq.d/                       1176   0.0
SFE196 (SFE196Q) /CSM/SF/SFE1-D/SFE196Q.Seq.d/                       1176   0.0
AFI301 (AFI301Q) /CSM/AF/AFI3-A/AFI301Q.Seq.d/                       1176   0.0
SLB129 (SLB129Q) /CSM/SL/SLB1-B/SLB129Q.Seq.d/                       1168   0.0
SFK654 (SFK654Q) /CSM/SF/SFK6-C/SFK654Q.Seq.d/                       1168   0.0
SFG761 (SFG761Q) /CSM/SF/SFG7-C/SFG761Q.Seq.d/                       1160   0.0
CFJ653 (CFJ653Q) /CSM/CF/CFJ6-C/CFJ653Q.Seq.d/                       1160   0.0
AFD319 (AFD319Q) /CSM/AF/AFD3-A/AFD319Q.Seq.d/                       1158   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34   1e-08  13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   8e-08  20
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   6e-07  16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   2e-06  19
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   3e-06  15
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   3e-06  12
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   1e-05  18
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   4e-05  19
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    32   3e-04  12
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   3e-04  18
dna update 2004. 3. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 50   3e-11
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 51   5e-11
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 52   6e-10
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 43   4e-07
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 50   1e-04
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 33   0.004
CR361548_6(CR361548|pid:none) Zebrafish DNA sequence from clone ...    40   0.13
CR361548_3(CR361548|pid:none) Zebrafish DNA sequence from clone ...    40   0.13
AP006270_80(AP006270|pid:none) Adoxophyes honmai nucleopolyhedro...    40   0.22
EU591746_77(EU591746|pid:none) Adoxophyes orana nucleopolyhedrov...    39   0.38
protein update 2009. 5.13
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.04  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CFE544 is nuc
5' end seq. ID CFE544F
5' end seq. 
>CFE544F.Seq
ATTCAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTT
TAATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTC
AACAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAA
GTGATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAAT
ATTGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAAC
AATCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATC
AATTAGATCTAGATCTTTGGGATAATTTTAATATAATAGGANGGTGGTGGACCATTTGCA
CCAACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGA
TTCAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAAT
GACTTTTTCCGTTTTTCAATTATGGGTGAAATTTGGGTTTTCTTCAATAATACTNTAATA
GCTGATCGAGCT----------
Length of 5' end seq. 612
3' end seq. ID CFE544Z
3' end seq. 
>CFE544Z.Seq
----------TCTTTGTTTAACAATTCCAATTGATTGTGCAAATTTAGAACCAGATTGTC
CAACATCTGTATGTTTTGATGGTCAATGTTCAGTTTGTGAAGTTGATTCAAGCTCTGTTG
ATATTTCAACCACTGGTATAGTTACAACCACTGGCATTTCTATATCTACAATTGGTCCTG
TATCAACAACTGATTTATCAATTTCAACAATTGGTTTTGTAACTACCACTGGTGTAACAG
CTTCAACGATTGGCATTGTTACTACAACTGGTTTCATAACTTCAACAACTTCAACAACTG
GTTTATTAACCACTGCTTCAACAACCTCAACAACTGGTATATTAACCACTGCTTCATCAA
CTTCAACAACGGGAATACCAACAATTTCAACATCAATTTCGACATCAGGAGCAACAGGAA
CAACAACAACCCCAACAACAGGTTCCACTGGAACAATACCACCTATTGACCTTGCAAAAT
GTAGTCATGATTCTTGCCCACCTCATTATTACTGTTATCAATTAACAAATTCATACACTT
GTATATCAAAAGAATTTTATAATAATTGTGAACCTGAAAGATTAATATTATTTTATTAAT
AATTAAAAACAAAAATAAATAAAAAACCAAATTTTAAAACTTTA
Length of 3' end seq. 634
Connected seq. ID CFE544P
Connected seq. 
>CFE544P.Seq
ATTCAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTT
TAATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTC
AACAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAA
GTGATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAAT
ATTGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAAC
AATCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATC
AATTAGATCTAGATCTTTGGGATAATTTTAATATAATAGGANGGTGGTGGACCATTTGCA
CCAACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGA
TTCAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAAT
GACTTTTTCCGTTTTTCAATTATGGGTGAAATTTGGGTTTTCTTCAATAATACTNTAATA
GCTGATCGAGCT----------TCTTTGTTTAACAATTCCAATTGATTGTGCAAATTTAG
AACCAGATTGTCCAACATCTGTATGTTTTGATGGTCAATGTTCAGTTTGTGAAGTTGATT
CAAGCTCTGTTGATATTTCAACCACTGGTATAGTTACAACCACTGGCATTTCTATATCTA
CAATTGGTCCTGTATCAACAACTGATTTATCAATTTCAACAATTGGTTTTGTAACTACCA
CTGGTGTAACAGCTTCAACGATTGGCATTGTTACTACAACTGGTTTCATAACTTCAACAA
CTTCAACAACTGGTTTATTAACCACTGCTTCAACAACCTCAACAACTGGTATATTAACCA
CTGCTTCATCAACTTCAACAACGGGAATACCAACAATTTCAACATCAATTTCGACATCAG
GAGCAACAGGAACAACAACAACCCCAACAACAGGTTCCACTGGAACAATACCACCTATTG
ACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCATTATTACTGTTATCAATTAACAA
ATTCATACACTTGTATATCAAAAGAATTTTATAATAATTGTGAACCTGAAAGATTAATAT
TATTTTATTAATAATTAAAAACAAAAATAAATAAAAAACCAAATTTTAAAACTTTA
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -