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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE502
Library CF
(Link to library)
Clone ID CFE502
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID CFE502P
(Link to Original site)
Representative DNA sequence 
>CFE502 (CFE502Q) /CSM/CF/CFE5-A/CFE502Q.Seq.d/
CATTATATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGNGAAAGNCATCGCT
CANAATATACATGTAAATCAGATAGAAGNCTGNGCATATTNACCATTTGTATCATGXXXX
XXXXXXGATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACA
TTGCTCAAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTC
AAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTA
TTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTA
CAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTT
CTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCA
GTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTC
CATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAG
CTTCAAGTTCAGCTGCATCATC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
HYIYHQLLVGVVAEIXKXIAXNIHVNQIEXXAYXPFVS---

---LEVIQLVLKQDHRYHHHIAQTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPIC
IHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSS
SAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAAS
Translated Amino Acid sequence (All Frames) 
Frame A:
HYIYHQLLVGVVAEIXKXIAXNIHVNQIEXXAYXPFVS---

---d*r*snly*skttgttttllklvqsyhqhvitle*fvfkyqaivpildshvahliqf
vfihqllllqplqqlhqlsqlqplqllqvqqlvelqlvvqllivvllpqpivalpphhhq
avllqvplqvnhqvaplqvvlhpllqvalhplpqvvlhhhqlqvqlhh

Frame B:
iisitnfwlgwwqrlxkxslxiym*ir*kxxhixhlyh---

---irgnptcikarppvppphcsnlcraiism*srwndlysstkqlyqy*ipmlpissnl
yssinyccfnhcnncincrnynlcnycrynnwwnynwwfnf***ccflsr**rcllitik
qccfkcrfk*tik*rrfk*csilcfk*rsilclk*csiiisfkfscii

Frame C:
lylsptfgwgggrdxexhrsxytcksdrxlxixticim---

---LEVIQLVLKQDHRYHHHIAQTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPIC
IHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSS
SAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAAS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE502 (CFE502Q) /CSM/CF/CFE5-A/CFE502Q.Seq.d/                       1138   0.0
SLA847 (SLA847Q) /CSM/SL/SLA8-B/SLA847Q.Seq.d/                        983   0.0
VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                        967   0.0
VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/                        967   0.0
VFA856 (VFA856Q) /CSM/VF/VFA8-C/VFA856Q.Seq.d/                        967   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        967   0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        967   0.0
SLG852 (SLG852Q) /CSM/SL/SLG8-C/SLG852Q.Seq.d/                        967   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                        967   0.0
SLG731 (SLG731Q) /CSM/SL/SLG7-B/SLG731Q.Seq.d/                        967   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.   862   0.0    5
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.   190   2e-44  1
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A).    36   0.19   2
AK100095|AK100095.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence.    36   1.1    2
BX842653|BX842653.1 Bdellovibrio bacteriovorus complete genome, strain HD100; segment  8/11.    44   2.4    1
AE017095|AE017095.1 Oryza sativa (japonica cultivar-group) chromosome 10, section 49 of 77 of the complete sequence.    44   2.4    1
CF324744|CF324744.1 JMT1--01-F20.g1 AtJMT-overexpressing transgenic rice lambda phage cDNA library (JMT1) Oryza sativa cDNA clone JMT1--01-F20, mRNA sequence.    44   2.4    1
CB670885|CB670885.1 OSJNEe04D05.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA clone OSJNEe04D05 3', mRNA sequence.    44   2.4    1
AU068578|AU068578.1 Oryza sativa cDNA, partial sequence (C30478_11Z).    44   2.4    1
CF953253|CF953253.1 2130rsiceb_2968.y1 Oryza sativa cv. PA64s leaf cDNA library Oryza sativa cDNA 5', mRNA sequence.    44   2.4    1
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        65   2e-18
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    65   2e-18
(P26222) RecName: Full=Endoglucanase E-2;          EC=3.2.1.4; A...    33   4.9
EU247178_1(EU247178|pid:none) Lycosa singoriensis clone LSsin992...    33   6.4
protein update 2008.12.26
PSORT 

 psg: 0.88  gvh: 0.45  alm: 0.38  top: 0.43  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFE502 is cyt
5' end seq. ID CFE502F
5' end seq. 
>CFE502F.Seq
CATTATATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGNGAAAGNCATCGCT
CANAATATACATGTAAATCAGATAGAAGNCTGNGCATATTNACCATTTGTATCATG----
------
Length of 5' end seq. 116
3' end seq. ID CFE502Z
3' end seq. 
>CFE502Z.Seq
----------GATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCAC
CACATTGCTCAAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGT
ATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATT
TGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCA
ACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCA
ACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCA
AGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGT
GCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCA
TCAGCTTCAAGTTCAGCTGCATCATC
Length of 3' end seq. 496
Connected seq. ID CFE502P
Connected seq. 
>CFE502P.Seq
CATTATATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGNGAAAGNCATCGCT
CANAATATACATGTAAATCAGATAGAAGNCTGNGCATATTNACCATTTGTATCATG----
------GATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACA
TTGCTCAAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTC
AAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTA
TTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTA
CAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTT
CTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCA
GTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTC
CATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAG
CTTCAAGTTCAGCTGCATCATC
Length of connected seq. 612
Full length Seq ID -
Full length Seq. -
Length of full length seq. -