>CFE472 (CFE472Q) /CSM/CF/CFE4-C/CFE472Q.Seq.d/
AAAAAAATATATTTCATAAAAATTCAAAAATAACTCAAGAGAAGAGAATAAAATTTCAAA
TATTTAAATAACTTTAACAGAAATCAAAAAAAAAGTAATTGTAAAAAGAGTAGTATCAAT
ATAGAATATAAATAAAAACAAAATGCAAAGATCAAAACANGAAACTAGAAAATCACAATA
TAAAAAGTCAATTGATTCAGATGAGTCACGTAGAAAGAGAGAAGAAGCTTCACTCTNTAT
TAGAAAGAATAAAAGAGAAGAANGTTTATTAAAAAAGAGAACTCAAGCAGTCCCAGGTTC
TACTCCAGTTAAAGTTGATTCTTTAATTAACCAAAGATTGGAACAACTCCCATCTTTAGT
TGCAGAAATTAATTCAGAAAACCCAGATTTAATTTTAAAATCAACTACAGCATTTAGAAA
ATTACTTTCAATTGAAAAATCCCCACCAATTGAAGAAGTTATTAAAACTGGTATTGTCCC
AAGACTCGTTAAATTTTTATATATGCAAGATTTCCCACAACTTCAATTTGAAGCAGCATG
GGCATTAACAAATATTGCATXXXXXXXXXX

kkyis*kfknnsreenkisni*itlteikkkvivkrvvsi*NINKNKMQRSKXETRKSQY
KKSIDSDESRRKREEASLXIRKNKREEXLLKKRTQAVPGSTPVKVDSLINQRLEQLPSLV
AEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAW
ALTNIA---

Frame A:
kkiyfikiqk*lkrre*nfkylnnfnrnqkksnckkssinieyk*kqnakiktxn*kiti
*kvn*fr*vt*kerrsftly*ke*krrxfikkensssprfyss*s*ffn*pkigttpifs
crn*frkprfnfkinysi*kitfn*kiptn*rsy*nwycpktr*ifiyarfpttsi*ssm
ginkyc---


Frame B:
kkyis*kfknnsreenkisni*itlteikkkvivkrvvsi*NINKNKMQRSKXETRKSQY
KKSIDSDESRRKREEASLXIRKNKREEXLLKKRTQAVPGSTPVKVDSLINQRLEQLPSLV
AEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAW
ALTNIA---


Frame C:
knifhknskitqekrikfqifk*l*qkskkk*l*ke*yqyri*iktkckdqnxklenhni
ksqliqmshverekklhsxlerikekxvy*krelkqsqvllqlklil*ltkdwnnshl*l
qkliqktqi*f*nqlqhlenyfqlknphqlkkllklvlsqdslnfyickishnfnlkqhg
h*qil---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI254 (CHI254Q) /CSM/CH/CHI2-C/CHI254Q.Seq.d/                        729   0.0
CFE472 (CFE472Q) /CSM/CF/CFE4-C/CFE472Q.Seq.d/                        729   0.0
AFN276 (AFN276Q) /CSM/AF/AFN2-D/AFN276Q.Seq.d/                        729   0.0
AFL634 (AFL634Q) /CSM/AF/AFL6-B/AFL634Q.Seq.d/                        729   0.0
AFK832 (AFK832Q) /CSM/AF/AFK8-B/AFK832Q.Seq.d/                        728   0.0
SLK645 (SLK645Q) /CSM/SL/SLK6-B/SLK645Q.Seq.d/                        722   0.0
SLC533 (SLC533Q) /CSM/SL/SLC5-B/SLC533Q.Seq.d/                        714   0.0
AFF204 (AFF204Q) /CSM/AF/AFF2-A/AFF204Q.Seq.d/                        615   e-175
SFK303 (SFK303Q) /CSM/SF/SFK3-A/SFK303Q.Seq.d/                        613   e-174
CHI452 (CHI452Q) /CSM/CH/CHI4-C/CHI452Q.Seq.d/                        204   1e-51

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.   375   0.0    8
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    38   4e-05  10
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    50   6e-05  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   6e-05  11
AF547983|AF547983.1 Schizosaccharomyces japonicus mitochondrial DNA, complete genome.    36   9e-05  8
BC047409|BC047409.1 Homo sapiens, karyopherin alpha 5 (importin alpha 6), clone MGC:51011 IMAGE:5297277, mRNA, complete cds.    58   1e-04  1
AF005361|AF005361.1 Homo sapiens importin alpha 6 mRNA, complete cds.    58   1e-04  1
BG723537|BG723537.1 602694243F1 NIH_MGC_97 Homo sapiens cDNA clone IMAGE:4826482 5', mRNA sequence.    58   1e-04  1
CQ719522|CQ719522.1 Sequence 5456 from Patent WO02068579.          58   1e-04  1
BI560436|BI560436.1 603253991F1 NIH_MGC_97 Homo sapiens cDNA clone IMAGE:5296150 5', mRNA sequence.    58   1e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76P29) RecName: Full=Importin subunit alpha-B; AltName: Full=K...   233   2e-60
(Q71VM4) RecName: Full=Importin subunit alpha-1a;  &AB004660_1(A...   126   3e-28
AF005265_1(AF005265|pid:none) Oryza sativa importin mRNA, comple...   126   3e-28
BT053085_1(BT053085|pid:none) Medicago truncatula clone MTYFL_FM...   125   6e-28
EU959766_1(EU959766|pid:none) Zea mays clone 219897 importin alp...   125   8e-28
AB236757_1(AB236757|pid:none) Trifolium pratense RNA for putativ...   125   8e-28
AM432887_1(AM432887|pid:none) Vitis vinifera contig VV78X186549....   125   1e-27
EF137254_1(EF137254|pid:none) Nicotiana benthamiana Impa2 mRNA, ...   125   1e-27
BT063489_1(BT063489|pid:none) Zea mays full-length cDNA clone ZM...   124   1e-27
AB024311_1(AB024311|pid:none) Oryza sativa Japonica Group mRNA f...   124   1e-27

 psg: 0.42  gvh: 0.32  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.03
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CFE472 is nuc

>CFE472F.Seq
AAAAAAATATATTTCATAAAAATTCAAAAATAACTCAAGAGAAGAGAATAAAATTTCAAA
TATTTAAATAACTTTAACAGAAATCAAAAAAAAAGTAATTGTAAAAAGAGTAGTATCAAT
ATAGAATATAAATAAAAACAAAATGCAAAGATCAAAACANGAAACTAGAAAATCACAATA
TAAAAAGTCAATTGATTCAGATGAGTCACGTAGAAAGAGAGAAGAAGCTTCACTCTNTAT
TAGAAAGAATAAAAGAGAAGAANGTTTATTAAAAAAGAGAACTCAAGCAGTCCCAGGTTC
TACTCCAGTTAAAGTTGATTCTTTAATTAACCAAAGATTGGAACAACTCCCATCTTTAGT
TGCAGAAATTAATTCAGAAAACCCAGATTTAATTTTAAAATCAACTACAGCATTTAGAAA
ATTACTTTCAATTGAAAAATCCCCACCAATTGAAGAAGTTATTAAAACTGGTATTGTCCC
AAGACTCGTTAAATTTTTATATATGCAAGATTTCCCACAACTTCAATTTGAAGCAGCATG
GGCATTAACAAATATTGCAT----------