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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE467
Library CF
(Link to library)
Clone ID CFE467
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11569-1
Original site URL
Representative seq. ID CFE467P
(Link to Original site)
Representative DNA sequence 
>CFE467 (CFE467Q) /CSM/CF/CFE4-C/CFE467Q.Seq.d/
TATTTCAACAACTTCAACAATTCCACCAATATCTCCAATAATATCAACAACAACAATATC
ATCAACAACAACAACAACAACAACAACAACACCACCACCACCAACATCATTATCATCAAA
TACAACAACAACAATAACAACACCAATAATAGAACAACTAACAATTATTCATCAATATAT
TTATTCATCAGGTGGTTTATTCCCAAAACCAATTAATCCAAATATTACAATTGAAAAGAA
AACTTTAGAATATTTTAAATTTTTAGGAATGTTTATTGCAAAAGCATTTTTTGATCAAAG
ATTAATTGATTTACCATTGTCTAAACCAATGTATAAATATATGATCGATCAAGAGTTAAA
CTTTGATGACCTTCGTCAATTGGCACCAACATATGCATCTTCACTCAATCGTTTATACAG
TTTAGTTACAAGTATAAAACAAATTCAGGCAAGATCAGATTTGGATGGTGCAGCCAAGAA
AGAAGAGGTTGGAAAACTTAGAGTTGATGGTGCAGTCATTGAAGATCTTTGTTTGGATTT
CACATTACCAGGTTTTGCCGGATGGGAATTGAAACCAAATGGTGAACAXXXXXXXXXXAA
ACCAAATGGTGAACAAATCAATGTTACCCTCGATAATATTGAAGAGTATTTGAATTTAAT
TGTTAAAAACTTTTTGTATGATGGTGTTATTAGACAAATCACATCTTTTAAGGAGGGATT
CAATCAAACTTTCCCAATCTCTAGTTTGAAACCATTCACCATTTCAGAGGTTGAATCACT
ATTGTGTGGTTCTTTAACTGGTTCCGAAAGTGATTGGACTCTTGATTCATTGATGGATAG
CACAAAGGCTGATCATGGCTACACTCTTCAAAGTAAATCCGTACAAAATATATTCCAAAT
CATGTCAGAGTTTACTCCACAAGAGAGAAAACAATTCCTCTTGTTCATTTCAGGTAGTCC
ACATCTTCCTTTACAAGGTTTCAAAGGTTTAATACCACGTCTTACCATTGTAAAGAAACA
TCACTCTCCACCACTCACACCAGATGATTACTTATTAAGTGTCATGTCTTGTACAAACTA
CATCAAATTACCAGATTATTCAACAAGAGAAGTAATGAAAGAGAAATTATTATACGCAAT
GAATGAAGGTCAATC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ISTTSTIPPISPIISTTTISSTTTTTTTTTPPPPTSLSSNTTTTITTPIIEQLTIIHQYI
YSSGGLFPKPINPNITIEKKTLEYFKFLGMFIAKAFFDQRLIDLPLSKPMYKYMIDQELN
FDDLRQLAPTYASSLNRLYSLVTSIKQIQARSDLDGAAKKEEVGKLRVDGAVIEDLCLDF
TLPGFAGWELKPNGE---

---KPNGEQINVTLDNIEEYLNLIVKNFLYDGVIRQITSFKEGFNQTFPISSLKPFTISE
VESLLCGSLTGSESDWTLDSLMDSTKADHGYTLQSKSVQNIFQIMSEFTPQERKQFLLFI
SGSPHLPLQGFKGLIPRLTIVKKHHSPPLTPDDYLLSVMSCTNYIKLPDYSTREVMKEKL
LYAMNEGQ
Translated Amino Acid sequence (All Frames) 
Frame A:
yfnnfnnstnisnninnnniinnnnnnnnnttttniiiikynnnnnntnnrttnnyssiy
lfirwfipktn*skyyn*kenfrif*ifrnvycksif*skin*ftiv*tnv*iydrsrvk
l**pssigtniciftqsfiqfsykyktnsgkirfgwcsqerrgwkt*s*wcsh*rslfgf
hitrfcrmgietkw*t---

---KPNGEQINVTLDNIEEYLNLIVKNFLYDGVIRQITSFKEGFNQTFPISSLKPFTISE
VESLLCGSLTGSESDWTLDSLMDSTKADHGYTLQSKSVQNIFQIMSEFTPQERKQFLLFI
SGSPHLPLQGFKGLIPRLTIVKKHHSPPLTPDDYLLSVMSCTNYIKLPDYSTREVMKEKL
LYAMNEGQ

Frame B:
ISTTSTIPPISPIISTTTISSTTTTTTTTTPPPPTSLSSNTTTTITTPIIEQLTIIHQYI
YSSGGLFPKPINPNITIEKKTLEYFKFLGMFIAKAFFDQRLIDLPLSKPMYKYMIDQELN
FDDLRQLAPTYASSLNRLYSLVTSIKQIQARSDLDGAAKKEEVGKLRVDGAVIEDLCLDF
TLPGFAGWELKPNGE---

---nqmvnksmlpsiilksi*i*llktfcmmvlldkshllrrdsiklsqslv*nhspfqr
lnhycvvl*lvpkvigllih*wiaqrlimatlfkvnpykiyskscqsllhkrennsscsf
qvvhiflykvskv*yhvlpl*rnitlhhshqmity*vsclvqttsnyqiiqqek**krny
ytq*mkvn

Frame C:
fqqlqqfhqylq*yqqqqyhqqqqqqqqqhhhhqhhyhqiqqqq*qhq**nn*qlfinif
ihqvvysqnqliqilqlkrkl*nilnf*ecllqkhflikd*liyhclnqcini*siks*t
lmtfvnwhqhmhlhsivytv*lqv*nkfrqdqiwmvqprkkrlenlelmvqslkifvwis
hyqvlpdgn*nqmvn---

---tkw*tnqcypr*y*rvfefnc*klfv*wcy*tnhif*ggiqsnfpnl*fetihhfrg
*itivwffnwfrk*lds*fidg*hkg*swlhssk*irtkyipnhvrvystrektiplvhf
r*stssftrfqrfnttsyhcketslstthtr*llikchvlyklhqitrlfnkrsnereii
irne*rsi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE467 (CFE467Q) /CSM/CF/CFE4-C/CFE467Q.Seq.d/                       1905   0.0
CHK463 (CHK463Q) /CSM/CH/CHK4-C/CHK463Q.Seq.d/                        605   e-172
CFJ316 (CFJ316Q) /CSM/CF/CFJ3-A/CFJ316Q.Seq.d/                         40   0.074
VSF680 (VSF680Q) /CSM/VS/VSF6-D/VSF680Q.Seq.d/                         38   0.29
VHL609 (VHL609Q) /CSM/VH/VHL6-A/VHL609Q.Seq.d/                         38   0.29
VHK313 (VHK313Q) /CSM/VH/VHK3-A/VHK313Q.Seq.d/                         38   0.29
VHD545 (VHD545Q) /CSM/VH/VHD5-B/VHD545Q.Seq.d/                         38   0.29
VFK868 (VFK868Q) /CSM/VF/VFK8-C/VFK868Q.Seq.d/                         38   0.29
VFH417 (VFH417Q) /CSM/VF/VFH4-A/VFH417Q.Seq.d/                         38   0.29
VFD508 (VFD508Q) /CSM/VF/VFD5-A/VFD508Q.Seq.d/                         38   0.29
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   1e-05  19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-05  21
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  40   0.004  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   0.006  15
AL646093|AL646093.9 Mouse DNA sequence from clone RP23-55I2 on chromosome 11.    44   0.013  4
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34   0.017  18
BQ518661|BQ518661.1 EST626076 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMJL41 5' end, mRNA sequence.    52   0.018  1
BQ518662|BQ518662.1 EST626077 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMJL41 3' end, mRNA sequence.    52   0.018  1
BM406717|BM406717.1 EST581044 potato roots Solanum tuberosum cDNA clone cPRO28J5 5' end , mRNA sequence.    52   0.018  1
AC106564|AC106564.5 Rattus norvegicus clone CH230-53P24, WORKING DRAFT SEQUENCE, 1 ordered piece.    52   0.018  1
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX255887_3(BX255887|pid:none) Zebrafish DNA sequence from clone ...   249   2e-64
BT011134_1(BT011134|pid:none) Drosophila melanogaster HL01545 fu...   248   3e-64
D28476_1(D28476|pid:none) Homo sapiens KIAA0045 mRNA, partial cds.    244   5e-63
BC114556_1(BC114556|pid:none) Homo sapiens thyroid hormone recep...   244   5e-63
BC113891_1(BC113891|pid:none) Homo sapiens thyroid hormone recep...   244   5e-63
BC105889_1(BC105889|pid:none) Rattus norvegicus thyroid hormone ...   243   9e-63
BC100624_1(BC100624|pid:none) Rattus norvegicus thyroid hormone ...   243   9e-63
BC088304_1(BC088304|pid:none) Rattus norvegicus thyroid hormone ...   243   9e-63
AC121235_12(AC121235|pid:none) Medicago truncatula clone mth2-21...   241   3e-62
BC068967_1(BC068967|pid:none) Xenopus laevis hypothetical protei...   241   4e-62
protein update 2009. 5.13
PSORT 

 psg: 0.90  gvh: 0.40  alm: 0.44  top: 0.43  tms: 0.00  mit: 0.63  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: vacuolar

>> prediction for CFE467 is mit
5' end seq. ID CFE467F
5' end seq. 
>CFE467F.Seq
TATTTCAACAACTTCAACAATTCCACCAATATCTCCAATAATATCAACAACAACAATATC
ATCAACAACAACAACAACAACAACAACAACACCACCACCACCAACATCATTATCATCAAA
TACAACAACAACAATAACAACACCAATAATAGAACAACTAACAATTATTCATCAATATAT
TTATTCATCAGGTGGTTTATTCCCAAAACCAATTAATCCAAATATTACAATTGAAAAGAA
AACTTTAGAATATTTTAAATTTTTAGGAATGTTTATTGCAAAAGCATTTTTTGATCAAAG
ATTAATTGATTTACCATTGTCTAAACCAATGTATAAATATATGATCGATCAAGAGTTAAA
CTTTGATGACCTTCGTCAATTGGCACCAACATATGCATCTTCACTCAATCGTTTATACAG
TTTAGTTACAAGTATAAAACAAATTCAGGCAAGATCAGATTTGGATGGTGCAGCCAAGAA
AGAAGAGGTTGGAAAACTTAGAGTTGATGGTGCAGTCATTGAAGATCTTTGTTTGGATTT
CACATTACCAGGTTTTGCCGGATGGGAATTGAAACCAAATGGTGAACA----------
Length of 5' end seq. 588
3' end seq. ID CFE467Z
3' end seq. 
>CFE467Z.Seq
----------AAACCAAATGGTGAACAAATCAATGTTACCCTCGATAATATTGAAGAGTA
TTTGAATTTAATTGTTAAAAACTTTTTGTATGATGGTGTTATTAGACAAATCACATCTTT
TAAGGAGGGATTCAATCAAACTTTCCCAATCTCTAGTTTGAAACCATTCACCATTTCAGA
GGTTGAATCACTATTGTGTGGTTCTTTAACTGGTTCCGAAAGTGATTGGACTCTTGATTC
ATTGATGGATAGCACAAAGGCTGATCATGGCTACACTCTTCAAAGTAAATCCGTACAAAA
TATATTCCAAATCATGTCAGAGTTTACTCCACAAGAGAGAAAACAATTCCTCTTGTTCAT
TTCAGGTAGTCCACATCTTCCTTTACAAGGTTTCAAAGGTTTAATACCACGTCTTACCAT
TGTAAAGAAACATCACTCTCCACCACTCACACCAGATGATTACTTATTAAGTGTCATGTC
TTGTACAAACTACATCAAATTACCAGATTATTCAACAAGAGAAGTAATGAAAGAGAAATT
ATTATACGCAATGAATGAAGGTCAATC
Length of 3' end seq. 557
Connected seq. ID CFE467P
Connected seq. 
>CFE467P.Seq
TATTTCAACAACTTCAACAATTCCACCAATATCTCCAATAATATCAACAACAACAATATC
ATCAACAACAACAACAACAACAACAACAACACCACCACCACCAACATCATTATCATCAAA
TACAACAACAACAATAACAACACCAATAATAGAACAACTAACAATTATTCATCAATATAT
TTATTCATCAGGTGGTTTATTCCCAAAACCAATTAATCCAAATATTACAATTGAAAAGAA
AACTTTAGAATATTTTAAATTTTTAGGAATGTTTATTGCAAAAGCATTTTTTGATCAAAG
ATTAATTGATTTACCATTGTCTAAACCAATGTATAAATATATGATCGATCAAGAGTTAAA
CTTTGATGACCTTCGTCAATTGGCACCAACATATGCATCTTCACTCAATCGTTTATACAG
TTTAGTTACAAGTATAAAACAAATTCAGGCAAGATCAGATTTGGATGGTGCAGCCAAGAA
AGAAGAGGTTGGAAAACTTAGAGTTGATGGTGCAGTCATTGAAGATCTTTGTTTGGATTT
CACATTACCAGGTTTTGCCGGATGGGAATTGAAACCAAATGGTGAACA----------AA
ACCAAATGGTGAACAAATCAATGTTACCCTCGATAATATTGAAGAGTATTTGAATTTAAT
TGTTAAAAACTTTTTGTATGATGGTGTTATTAGACAAATCACATCTTTTAAGGAGGGATT
CAATCAAACTTTCCCAATCTCTAGTTTGAAACCATTCACCATTTCAGAGGTTGAATCACT
ATTGTGTGGTTCTTTAACTGGTTCCGAAAGTGATTGGACTCTTGATTCATTGATGGATAG
CACAAAGGCTGATCATGGCTACACTCTTCAAAGTAAATCCGTACAAAATATATTCCAAAT
CATGTCAGAGTTTACTCCACAAGAGAGAAAACAATTCCTCTTGTTCATTTCAGGTAGTCC
ACATCTTCCTTTACAAGGTTTCAAAGGTTTAATACCACGTCTTACCATTGTAAAGAAACA
TCACTCTCCACCACTCACACCAGATGATTACTTATTAAGTGTCATGTCTTGTACAAACTA
CATCAAATTACCAGATTATTCAACAAGAGAAGTAATGAAAGAGAAATTATTATACGCAAT
GAATGAAGGTCAATC
Length of connected seq. 1145
Full length Seq ID -
Full length Seq. -
Length of full length seq. -