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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFE454
Library CF
(Link to library)
Clone ID CFE454
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFE454P
(Link to Original site)
Representative DNA sequence 
>CFE454 (CFE454Q) /CSM/CF/CFE4-C/CFE454Q.Seq.d/
AAAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATG
GCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCT
TTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACT
ACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTT
GAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGT
AATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGA
ATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGT
TTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTC
CTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTA
TGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTAXXX
XXXXXXXATTGCAGGTGGTGCNATCGTTGCAGGCGCTGGTGCAGCAGCAGCCGGTGCAGC
AGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGTGGTTATATTTCTCG
TACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGTTATGCTAATCAAGG
TTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTAA
TGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTA
TGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATATCGC
CAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGATGG
AATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAACTTG
GGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAATGGC
TGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAG
AAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTNTTTCGAT
ATATACCCAACACCANNTAACTTGCACGTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAYPDENGLGWDILASF---

---IAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSIRSRATRYANQ
GYNSMRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDI
ANTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrm
aeqeerrrlmqeeserrrlqrnrerqepirtyttaqeaxsiytqhxxtct*
Translated Amino Acid sequence (All Frames) 
Frame A:
kinyffylhyiqfnfinflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhpt
thnfwacnsvinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdr
iadhsrrnhvdndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv
*yclsr*kwfgmgypcifl---

---IAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSIRSRATRYANQ
GYNSMRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDI
ANTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrm
aeqeerrrlmqeeserrrlqrnrerqepirtyttaqeaxsiytqhxxtct*

Frame B:
kliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAYPDENGLGWDILASF---

---lqvvxslqalvqqqpvqqpvlrvvpqellpelvviflvllvvlvtlyvaellvmlik
vtip*emvhkelatahvimlmkvtip*emvhkelatahvimlnkvikhgekvsmrlvmis
pilhmm*vmvspilhvk*vmeleslqrrdmnslkmelkklg*rnikgyp*lklkkhnkew
lnkkkeeg*ckkkvkeddcketekdksqleliqlhkklfryipntx*lark

Frame C:
n*lfflsslyti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashy
s*flgm**ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*n
c*sq*tkpc***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihsm
illiqmkmvwdgislhlf---

---crwcxrcrrwcsssrcssrc*gwcrrscfqswwlyfsyc*scw*lyt*qsyslc*sr
lqfhekwctkswqrrt*lc**rlqfrerwctkswqrrt*lcstrlssmerrcq*dw**yr
qyct*cr*wfrqyct*sr*wn*nhcrggi*th*rws*rnlgeeilkviln*n*ksttkng
*trrkkkvdarrk*kktiakkqrktran*nlynctrsxfdiyptpxnlhvk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFE454 (CFE454Q) /CSM/CF/CFE4-C/CFE454Q.Seq.d/                       2155   0.0
SFK831 (SFK831Q) /CSM/SF/SFK8-B/SFK831Q.Seq.d/                       1146   0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/                       1146   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                       1146   0.0
SFJ191 (SFJ191Q) /CSM/SF/SFJ1-D/SFJ191Q.Seq.d/                       1146   0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/                       1146   0.0
SFG737 (SFG737Q) /CSM/SF/SFG7-B/SFG737Q.Seq.d/                       1146   0.0
SFF510 (SFF510Q) /CSM/SF/SFF5-A/SFF510Q.Seq.d/                       1146   0.0
SFE450 (SFE450Q) /CSM/SF/SFE4-C/SFE450Q.Seq.d/                       1146   0.0
SFD458 (SFD458Q) /CSM/SF/SFD4-C/SFD458Q.Seq.d/                       1146   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    64   5e-10  9
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    56   5e-09  9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.004  11
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    34   0.006  12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   0.011  12
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    40   0.016  12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.018  11
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32   0.028  11
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   0.058  13
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence.    32   0.059  6
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo...    51   1e-04
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   5e-04
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16...    49   5e-04
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   5e-04
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    49   5e-04
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele...    47   0.001
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    46   0.002
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo...    44   0.009
AB207257_1(AB207257|pid:none) Polypedilum vanderplanki PvLEA3 mR...    42   0.035
BT050559_1(BT050559|pid:none) Drosophila melanogaster AT13054 fu...    42   0.046
protein update 2009. 5.13
PSORT 

 psg: 0.73  gvh: 0.56  alm: 0.30  top: 0.80  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFE454 is cyt
5' end seq. ID CFE454F
5' end seq. 
>CFE454F.Seq
AAAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATG
GCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCT
TTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACT
ACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTT
GAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGT
AATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGA
ATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGT
TTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTC
CTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTA
TGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTA---
-------
Length of 5' end seq. 597
3' end seq. ID CFE454Z
3' end seq. 
>CFE454Z.Seq
----------ATTGCAGGTGGTGCNATCGTTGCAGGCGCTGGTGCAGCAGCAGCCGGTGC
AGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGTGGTTATATTTC
TCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGTTATGCTAATCA
AGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGC
TAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAA
TTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATAT
CGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGA
TGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAAC
TTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAAT
GGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCA
AAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTNTTTC
GATATATACCCAACACCANNTAACTTGCACGTAAAA
Length of 3' end seq. 686
Connected seq. ID CFE454P
Connected seq. 
>CFE454P.Seq
AAAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATG
GCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCT
TTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACT
ACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTT
GAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGT
AATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGA
ATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGT
TTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTC
CTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTA
TGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTA---
-------ATTGCAGGTGGTGCNATCGTTGCAGGCGCTGGTGCAGCAGCAGCCGGTGCAGC
AGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGTGGTTATATTTCTCG
TACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGTTATGCTAATCAAGG
TTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTAA
TGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTA
TGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATATCGC
CAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGATGG
AATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAACTTG
GGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAATGGC
TGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAG
AAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTNTTTCGAT
ATATACCCAACACCANNTAACTTGCACGTAAAA
Length of connected seq. 1283
Full length Seq ID -
Full length Seq. -
Length of full length seq. -